qrqc 1.1.3
Vince Buffalo
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/qrqc | | Last Changed Rev: 55809 / Revision: 56351 | | Last Changed Date: 2011-05-24 13:46:28 -0700 (Tue, 24 May 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=qrqc.buildbin-libdir qrqc_1.1.3.tar.gz'
>>>>>>>
* installing *source* package ‘qrqc’ ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include" -fPIC -g -O2 -Wall -pedantic -c R_init_io.c -o R_init_io.o
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include" -fPIC -g -O2 -Wall -pedantic -c io.c -o io.o
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qrqc.so R_init_io.o io.o -lz -L/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/usrlib/i386 -lbam -lbcf -ltabix -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/i386
*** arch - ppc
Error in system.file("usretc", .Platform[["r_arch"]], "Rsamtools.mk", :
no file found
Calls: cat -> system.file
Execution halted
Error in system.file("usretc", .Platform[["r_arch"]], "Rsamtools.mk", :
no file found
Calls: cat -> system.file
Execution halted
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include" -fPIC -g -O2 -Wall -pedantic -c R_init_io.c -o R_init_io.o
gcc-4.2 -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/ppc -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include" -fPIC -g -O2 -Wall -pedantic -c io.c -o io.o
gcc-4.2 -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qrqc.so R_init_io.o io.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/ppc
*** arch - x86_64
Error in system.file("usretc", .Platform[["r_arch"]], "Rsamtools.mk", :
no file found
Calls: cat -> system.file
Execution halted
Error in system.file("usretc", .Platform[["r_arch"]], "Rsamtools.mk", :
no file found
Calls: cat -> system.file
Execution halted
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include" -fPIC -g -O2 -Wall -pedantic -c R_init_io.c -o R_init_io.o
gcc-4.2 -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/x86_64 -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.14/Resources/library/Rsamtools/include" -fPIC -g -O2 -Wall -pedantic -c io.c -o io.o
gcc-4.2 -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qrqc.so R_init_io.o io.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qrqc.buildbin-libdir/qrqc/libs/x86_64
** R
** inst
** preparing package for lazy loading
Loading required package: IRanges
Attaching package: ‘IRanges’
The following object(s) are masked from ‘package:base’:
Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
pmin, pmin.int, rbind, rep.int, setdiff, table, union
Loading required package: GenomicRanges
Loading required package: Biostrings
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
‘qrqc.Rnw’
** testing if installed package can be loaded
* DONE (qrqc)
>>>>>>>
>>>>>>> FIXING LINKS FOR qrqc.buildbin-libdir/qrqc/libs/i386/qrqc.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "qrqc.buildbin-libdir/qrqc/libs/i386/qrqc.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/i386/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/i386/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "qrqc.buildbin-libdir/qrqc/libs/i386/qrqc.so"
>>>>>>>
>>>>>>> FIXING LINKS FOR qrqc.buildbin-libdir/qrqc/libs/ppc/qrqc.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "qrqc.buildbin-libdir/qrqc/libs/ppc/qrqc.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/ppc/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/ppc/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "qrqc.buildbin-libdir/qrqc/libs/ppc/qrqc.so"
>>>>>>>
>>>>>>> FIXING LINKS FOR qrqc.buildbin-libdir/qrqc/libs/x86_64/qrqc.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "qrqc.buildbin-libdir/qrqc/libs/x86_64/qrqc.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/x86_64/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "qrqc.buildbin-libdir/qrqc/libs/x86_64/qrqc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "qrqc.buildbin-libdir/qrqc/libs/x86_64/qrqc.so"