qpgraph 1.10.1
Robert Castelo
| Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/qpgraph | | Last Changed Rev: 61365 / Revision: 64395 | | Last Changed Date: 2011-12-15 02:00:15 -0800 (Thu, 15 Dec 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=qpgraph.buildbin-libdir qpgraph_1.10.1.tar.gz'
>>>>>>>
* installing *source* package 'qpgraph' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin9.8.0
checking host system type... i686-apple-darwin9.8.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c cliquer.c -o cliquer.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c graph.c -o graph.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_edge_nrr':
qpgraph.c:2571: warning: unused variable 'l'
qpgraph.c: In function 'qp_edge_nrr_identicalQs':
qpgraph.c:2626: warning: unused variable 'm'
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:5130: warning: assignment from incompatible pointer type
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c reorder.c -o reorder.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib/i386 -lRblas -L/Library/Frameworks/R.framework/Resources/lib/i386 -lRlapack -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Warning in .simpleDuplicateClass(def, prev) :
A specification for S3 class "connection" in package 'IRanges' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
A specification for S3 class "file" in package 'IRanges' seems equivalent to one from package 'graph' and is not turning on duplicate class definitions for this class
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'qpTxRegNet.Rnw'
** testing if installed package can be loaded
* DONE (qpgraph)
>>>>>>>
>>>>>>> FIXING LINKS FOR qpgraph.buildbin-libdir/qpgraph/libs/i386/qpgraph.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/i386/qpgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/i386/qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/i386/qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/i386/qpgraph.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=qpgraph.buildbin-libdir --libs-only qpgraph_1.10.1.tar.gz'
>>>>>>>
* installing *source* package 'qpgraph' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin9.8.0
checking host system type... i686-apple-darwin9.8.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c cliquer.c -o cliquer.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c graph.c -o graph.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_edge_nrr':
qpgraph.c:2571: warning: unused variable 'l'
qpgraph.c: In function 'qp_edge_nrr_identicalQs':
qpgraph.c:2626: warning: unused variable 'm'
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:5130: warning: assignment from incompatible pointer type
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c reorder.c -o reorder.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRblas -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRlapack -lgfortran -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/ppc
* DONE (qpgraph)
>>>>>>>
>>>>>>> FIXING LINKS FOR qpgraph.buildbin-libdir/qpgraph/libs/ppc/qpgraph.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/ppc/qpgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/ppc/qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/ppc/qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/ppc/qpgraph.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=qpgraph.buildbin-libdir --libs-only qpgraph_1.10.1.tar.gz'
>>>>>>>
* installing *source* package 'qpgraph' ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin9.8.0
checking host system type... i686-apple-darwin9.8.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c cliquer.c -o cliquer.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c graph.c -o graph.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c qpgraph.c -o qpgraph.o
qpgraph.c: In function 'qp_edge_nrr':
qpgraph.c:2571: warning: unused variable 'l'
qpgraph.c: In function 'qp_edge_nrr_identicalQs':
qpgraph.c:2626: warning: unused variable 'm'
qpgraph.c: In function 'qp_fast_rnd_graph':
qpgraph.c:5130: warning: assignment from incompatible pointer type
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -I/usr/local/include -I/usr/local/include -g -O2 -Wall -pedantic -Wall -pedantic -fPIC -g -O2 -Wall -pedantic -c reorder.c -o reorder.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRblas -L/Library/Frameworks/R.framework/Resources/lib/x86_64 -lRlapack -lgfortran -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs/x86_64
* DONE (qpgraph)
>>>>>>>
>>>>>>> FIXING LINKS FOR qpgraph.buildbin-libdir/qpgraph/libs/x86_64/qpgraph.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/x86_64/qpgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/x86_64/qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/x86_64/qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "qpgraph.buildbin-libdir/qpgraph/libs/x86_64/qpgraph.so"