predictionet 0.99.0
Benjamin Haibe-Kains , Catharina Olsen
| Snapshot Date: 2011-10-16 18:22:53 -0700 (Sun, 16 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/predictionet | | Last Changed Rev: 59264 / Revision: 59318 | | Last Changed Date: 2011-10-14 17:34:12 -0700 (Fri, 14 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | ERROR | skipped | skipped |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'predictionet' ...
** libs
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -mtune=core2 -c foo_mrmr.cpp -o foo_mrmr.o
foo_mrmr.cpp: In function 'double get_correlation(double*, int*, int, int, int)':
foo_mrmr.cpp:13:28: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:23:28: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp: In function 'void build_mim_subset(double*, double*, int*, int, int, int*, int)':
foo_mrmr.cpp:50:27: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:51:28: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:57:27: warning: comparison between signed and unsigned integer expressions
foo_mrmr.cpp:59:30: warning: comparison between signed and unsigned integer expressions
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -mtune=core2 -c mrnet_adapted.cpp -o mrnet_adapted.o
mrnet_adapted.cpp: In function 'SEXPREC* mrnet_adapted(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_adapted.cpp:58:28: warning: comparison between signed and unsigned integer expressions
mrnet_adapted.cpp:103:20: warning: comparison between signed and unsigned integer expressions
mrnet_adapted.cpp:131:28: warning: comparison between signed and unsigned integer expressions
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -O2 -Wall -mtune=core2 -c mrnet_ensemble_standalone.cpp -o mrnet_ensemble_standalone.o
mrnet_ensemble_standalone.cpp: In function 'void remove_equiv_subtrees(tree<int>&, tree<double>&)':
mrnet_ensemble_standalone.cpp:24:26: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:42:28: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:60:30: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:65:30: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp: In function 'int verify_equivalentset_nparents(tree<int>&, tree<int>::pre_order_iterator, tree<int>::pre_order_iterator, tree<double>&, int)':
mrnet_ensemble_standalone.cpp:111:7: warning: unused variable 'found'
mrnet_ensemble_standalone.cpp: In function 'int verify_equivalentset(tree<int>&, tree<int>::pre_order_iterator, tree<int>::pre_order_iterator, int, int*, int*)':
mrnet_ensemble_standalone.cpp:283:6: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp: In function 'void build_tree_int(tree<int>&, tree<int>::pre_order_iterator, tree<int>::pre_order_iterator, int*, int, int)':
mrnet_ensemble_standalone.cpp:304:6: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_mrmr_fix(double&, double&, double*, int*, int, int, int, int, int, int, int, int*)':
mrnet_ensemble_standalone.cpp:384:27: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:377:16: warning: unused variable 'boot_val'
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_mrmr(double&, double&, double*, int*, int, int, int, int, int, int, int, int*)':
mrnet_ensemble_standalone.cpp:414:27: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:417:28: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:426:26: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:433:26: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp: In function 'void bootstrap_tree(tree<int>&, tree<double>&, double*, int*, int, int, int)':
mrnet_ensemble_standalone.cpp:507:7: warning: unused variable 'cnt_back'
mrnet_ensemble_standalone.cpp:442:7: warning: unused variable 'nsub'
mrnet_ensemble_standalone.cpp: In function 'double mrnet_onegene(double*, int, int, int*, int, int)':
mrnet_ensemble_standalone.cpp:569:27: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:560:9: warning: unused variable 'max_val'
mrnet_ensemble_standalone.cpp: In function 'void mrmr_ensemble_one_gene(tree<int>&, tree<int>::pre_order_iterator, double*, int*, int, int, int, int, int, int, double)':
mrnet_ensemble_standalone.cpp:600:26: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:658:47: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:665:29: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:668:28: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:672:29: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:689:30: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:586:48: warning: unused variable 'nprev_sel'
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:760:27: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:799:27: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:813:26: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:822:27: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:777:13: warning: unused variable 'cnt2'
mrnet_ensemble_standalone.cpp:780:7: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp:794:7: warning: unused variable 'ind'
mrnet_ensemble_standalone.cpp:722:30: warning: unused variable 'res_all'
mrnet_ensemble_standalone.cpp:722:39: warning: unused variable 'res_all2'
mrnet_ensemble_standalone.cpp:723:6: warning: unused variable 'vec_tmp'
mrnet_ensemble_standalone.cpp: In function 'void mrmr_ensemble_one_gene_remove(tree<int>&, tree<int>::pre_order_iterator, double*, int*, int, int, int, int, int, int, double)':
mrnet_ensemble_standalone.cpp:860:26: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:904:29: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:912:28: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:915:69: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:919:28: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:848:48: warning: unused variable 'tmp_val_max_ind'
mrnet_ensemble_standalone.cpp:848:66: warning: unused variable 'prev_sel_tmp'
mrnet_ensemble_standalone.cpp:849:21: warning: unused variable 'vec_sort'
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble_remove(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:1029:27: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1066:27: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1080:26: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1089:27: warning: comparison between signed and unsigned integer expressions
mrnet_ensemble_standalone.cpp:1046:13: warning: unused variable 'cnt2'
mrnet_ensemble_standalone.cpp:1049:7: warning: unused variable 'rootdepth'
mrnet_ensemble_standalone.cpp:1063:7: warning: unused variable 'ind'
mrnet_ensemble_standalone.cpp:992:30: warning: unused variable 'res_all'
mrnet_ensemble_standalone.cpp:992:39: warning: unused variable 'res_all2'
mrnet_ensemble_standalone.cpp:993:6: warning: unused variable 'vec_tmp'
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:726:7: warning: 'Rres' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp:793:18: warning: 'res_old' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp: In function 'SEXPREC* mrmr_ensemble_remove(SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*, SEXPREC*)':
mrnet_ensemble_standalone.cpp:996:7: warning: 'Rres' may be used uninitialized in this function
mrnet_ensemble_standalone.cpp:1062:18: warning: 'res_old' may be used uninitialized in this function
g++ -shared -s -static-libgcc -o predictionet.dll tmp.def foo_mrmr.o mrnet_adapted.o mrnet_ensemble_standalone.o -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/predictionet.buildbin-libdir/predictionet/libs/i386
** R
** data
** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'predictionet.Rnw'
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'predictionet' as predictionet_0.99.0.zip
* DONE (predictionet)