Package: flowMerge

Version: 2.1.6

Command: /Library/Frameworks/R.framework/Versions/2.14/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch flowMerge_2.1.6.tar.gz

StartedAt: 2011-06-22 02:52:44 -0700 (Wed, 22 Jun 2011)

EndedAt: 2011-06-22 02:55:30 -0700 (Wed, 22 Jun 2011)

EllapsedTime: 165.5 seconds

RetCode: 0

Status:  OK

CheckDir: flowMerge.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.9-bioc/meat/flowMerge.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-06-03 r56037)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowMerge/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowMerge’ version ‘2.1.6’
* checking package name space information ... OK
* checking package dependencies ... NOTE
Package which this enhances but not available for checking: doMC
* checking if this is a source package ... OK
* checking whether package ‘flowMerge’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘flowMerge’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: graph
Loading required package: grid
Loading required package: mnormt
Loading required package: ellipse
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: flowCore
Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

Attaching package: ‘flowCore’

The following object(s) are masked from ‘package:stats’:

    alias, filter


Attaching package: ‘flowClust’

The following object(s) are masked from ‘package:mvtnorm’:

    dmvt

The following object(s) are masked from ‘package:graphics’:

    box

Loading required package: iterators
Loading required package: codetools
Creating a generic function for "merge" from package "base" in package “flowMerge”
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   ‘flowMerge.Rnw’ 
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-00)

* DONE (flowMerge)

name	user	system	elapsed
NENT	0.376	0.028	0.416
fitPiecewiseLinreg	0.209	0.023	0.238
flowClust.res	0.045	0.003	0.049
flowMerge-package	0.347	0.030	0.386
flowObj	0.199	0.024	0.232
map	0.006	0.001	0.007
merge-methods	0.296	0.025	0.328
merge	0.194	0.024	0.226
pFlowMerge	24.195	1.769	35.486
plot-methods	0.349	0.029	0.383
updateU	0.234	0.026	0.262