Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 96/516HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.4.0
Stephen Nyangoma
Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/clippda
Last Changed Rev: 59920 / Revision: 61898
Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011)
wilson2 Linux (openSUSE 11.4) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
moscato1 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK 
pitt Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: clippda
Version: 1.4.0
Command: E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch clippda_1.4.0.tar.gz
StartedAt: 2012-01-09 02:30:33 -0800 (Mon, 09 Jan 2012)
EndedAt: 2012-01-09 02:36:21 -0800 (Mon, 09 Jan 2012)
EllapsedTime: 347.7 seconds
RetCode: 0
Status:  OK  
CheckDir: clippda.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.9-bioc/meat/clippda.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'clippda/DESCRIPTION' ... OK
* this is package 'clippda' version '1.4.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'clippda' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely 'inst/CITATION' should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

clippda.Rcheck/00install.out:

* installing *source* package 'clippda' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'clippda.Rnw' 
** testing if installed package can be loaded
Warning message:
In rgl.init(initValue) : RGL: error: window class registration failed

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
ZvaluescasesVcontrolsPlots0.060.000.06
ZvaluesfrommultinomPlots1.610.021.63
aclinicalProteomicsData-class0.180.000.18
aclinicalProteomicsData-methods0.300.060.36
betweensampleVariance3.770.003.97
checkNo.replicates0.280.050.33
clippda-package129.33 0.78130.56
f000
fisherInformation0.120.000.12
liverRawData0.020.000.02
liver_pheno0.010.000.01
liverdata6.100.006.11
mostSimilarTwo000
negativeIntensitiesCorrection2.130.002.12
phenoDataFrame0.110.000.11
pheno_urine000
preProcRepeatedPeakData5.170.005.17
proteomicsExprsData0.260.000.27
proteomicspData0.110.000.11
replicateCorrelations6.600.056.64
sampleClusteredData2.090.002.09
sampleSize77.39 0.5477.99
sampleSize3DscatterPlots0.030.000.03
sampleSizeContourPlots0.050.000.06
sampleSizeParameters38.59 0.0838.70
sample_technicalVariance10.03 0.0810.13
spectrumFilter5.100.025.12
ztwo000