RdbiPgSQL 1.27.0
Jianhua Zhang
| Snapshot Date: 2011-04-19 07:20:05 -0700 (Tue, 19 Apr 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/RdbiPgSQL | | Last Changed Rev: 54802 / Revision: 54934 | | Last Changed Date: 2011-04-13 15:36:43 -0700 (Wed, 13 Apr 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | [ OK ] | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | N O T S U P P O R T E D |
* using log directory ‘/loc/home/biocbuild/bbs-2.9-bioc/meat/RdbiPgSQL.Rcheck’
* using R version 2.14.0 Under development (unstable) (2011-04-06 r55347)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RdbiPgSQL/DESCRIPTION’ ... OK
* this is package ‘RdbiPgSQL’ version ‘1.27.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘RdbiPgSQL’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: dbAppendTable.Rd:7-8: Dropping empty section \usage
prepare_Rd: dbAppendTable.Rd:9-10: Dropping empty section \arguments
prepare_Rd: internal.Rd:23-24: Dropping empty section \usage
prepare_Rd: internal.Rd:25-26: Dropping empty section \arguments
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... NOTE
S3 methods shown with full name in documentation object 'dbColumnInfo.PgSQL.result':
‘dbColumnInfo.PgSQL.result’
S3 methods shown with full name in documentation object 'dbReadTable.PgSQL.conn':
‘dbReadTable.PgSQL.conn’
The \usage entries for S3 methods should use the \method markup and not
their full name.
See the chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... NONE
* checking PDF version of manual ... OK
* installing *source* package ‘RdbiPgSQL’ ...
creating cache ./config.cache
checking for PQconnectdb in -lpq... yes
checking how to run the C preprocessor... cc -E
checking for /usr/include/libpq-fe.h... no
checking how to run the C preprocessor... cc -E
checking for /usr/include/pgsql/libpq-fe.h... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include -I/usr/include/pgsql -I/usr/local/include -fpic -g -O2 -Wall -c PgSQL.c -o PgSQL.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.9-bioc/R/include -I/usr/include/pgsql -I/usr/local/include -fpic -g -O2 -Wall -c PgSQLInit.c -o PgSQLInit.o
PgSQL.h:9:1: warning: ‘mkInteger’ defined but not used
PgSQL.h:18:1: warning: ‘mkLogical’ defined but not used
PgSQL.h:27:1: warning: ‘mkString_safe’ defined but not used
PgSQL.h:33:1: warning: ‘fetchPgString’ defined but not used
PgSQL.h:46:1: warning: ‘fetchPgInteger’ defined but not used
PgSQL.h:66:1: warning: ‘fetchPgDouble’ defined but not used
PgSQL.h:89:1: warning: ‘fetchPgLogical’ defined but not used
gcc -std=gnu99 -shared -L/usr/local/lib64 -o RdbiPgSQL.so PgSQL.o PgSQLInit.o -lpq -L/home/biocbuild/bbs-2.9-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.9-bioc/meat/RdbiPgSQL.Rcheck/RdbiPgSQL/libs
** R
** preparing package for lazy loading
*** Deprecation warning ***
The Rdbi package is deprecated and will be removed from
Bioconductor 2.9. Please use the DBI package instead. Thanks!
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (RdbiPgSQL)