MotIV 1.8.1
Eloi Mercier , Raphael Gottardo
| Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/MotIV | | Last Changed Rev: 60373 / Revision: 61898 | | Last Changed Date: 2011-11-15 17:44:53 -0800 (Tue, 15 Nov 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | [ OK ] |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* installing *source* package 'MotIV' ...
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WARNING: this package has a configure script
It probably needs manual configuration
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** libs
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O2 -Wall -mtune=core2 -c Alignment.cpp -o Alignment.o
Alignment.cpp: In member function 'virtual double SmithWatermanAffine::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:793:9: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double NeedlemanWunsch::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:592:9: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWaterman::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:244:9: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp:244:19: warning: 'revScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWatermanUngappedExtended::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:426:9: warning: 'forScore' may be used uninitialized in this function
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O2 -Wall -mtune=core2 -c ColumnComp.cpp -o ColumnComp.o
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O2 -Wall -mtune=core2 -c DeclareAll.cpp -o DeclareAll.o
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O2 -Wall -mtune=core2 -c Motif.cpp -o Motif.o
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O2 -Wall -mtune=core2 -c MotifDistances.cpp -o MotifDistances.o
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O2 -Wall -mtune=core2 -c MotifMatch.cpp -o MotifMatch.o
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O2 -Wall -mtune=core2 -c PlatformSupport.cpp -o PlatformSupport.o
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O2 -Wall -mtune=core2 -c RandPSSMGen.cpp -o RandPSSMGen.o
g++ -I"E:/biocbld/bbs-2.9-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -IC:/GSL/i386/include -O2 -Wall -mtune=core2 -c generateScoresDB.cpp -o generateScoresDB.o
g++ -shared -s -static-libgcc -o MotIV.dll tmp.def Alignment.o ColumnComp.o DeclareAll.o Motif.o MotifDistances.o MotifMatch.o PlatformSupport.o RandPSSMGen.o generateScoresDB.o -lws2_32 -LC:/GSL/i386/lib -lgsl -lgslcblas -lm -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/MotIV.buildbin-libdir/MotIV/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Warning in .simpleDuplicateClass(def, prev) :
A specification for class "pwm" in package 'MotIV' seems equivalent to one from package 'seqLogo' and is not turning on duplicate class definitions for this class
Creating a new generic function for 'filter' in package 'MotIV'
Creating a generic function for 'plot' from package 'graphics' in package 'MotIV'
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'MotIV.Rnw' using 'latin1'
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MotIV' as MotIV_1.8.1.zip
* DONE (MotIV)