KEGGSOAP 1.28.0
Bioconductor Package Maintainer
| Snapshot Date: 2012-01-08 18:22:44 -0800 (Sun, 08 Jan 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/KEGGSOAP | | Last Changed Rev: 59920 / Revision: 61898 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ WARNINGS ] | OK |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | WARNINGS | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* using log directory 'D:/biocbld/bbs-2.9-bioc/meat/KEGGSOAP.Rcheck'
* using R version 2.14.1 (2011-12-22)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'KEGGSOAP/DESCRIPTION' ... OK
* this is package 'KEGGSOAP' version '1.28.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking whether package 'KEGGSOAP' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... WARNING
Loading required package: methods
Error: .onLoad failed in loadNamespace() for 'KEGGSOAP', details:
call: as(doc, "XMLInternalDocument")
error: no method or default for coercing "XMLInternalElementNode" to "XMLInternalDocument"
Execution halted
A namespace must be able to be loaded with just the base namespace
loaded: otherwise if the namespace gets loaded by a saved object, the
session will be unable to start.
Probably some imports need to be declared in the NAMESPACE file.
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'KEGGSOAP/R/zzz.R':
.onLoad calls:
require("methods")
Package startup functions should not change the search path.
See section 'Good practice' in ?.onAttach.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
'D:/biocbld/bbs-2.9-bioc/meat/KEGGSOAP.Rcheck/00check.log'
for details
* installing *source* package 'KEGGSOAP' ...
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Note: Method with signature "PrimitiveSOAPType#list" chosen for function "resolve",
target signature "PrimitiveSOAPType#SchemaCollection".
"SOAPType#SchemaCollection" would also be valid
Note: Method with signature "ArrayType#list" chosen for function "resolve",
target signature "ArrayType#SchemaCollection".
"SimpleSequenceType#SchemaCollection" would also be valid
Warning messages:
1: Class "VirtualSOAPClass" is defined (with package slot 'SSOAP') but no metadata object found to revise subclass information---not exported? Making a copy in package '.GlobalEnv'
2: Class "VirtualXMLSchemaClass" is defined (with package slot 'XMLSchema') but no metadata object found to revise subclass information---not exported? Making a copy in package '.GlobalEnv'
* DONE (KEGGSOAP)