Package: Harshlight

Version: 1.26.0

Command: rm -rf Harshlight.buildbin-libdir && mkdir Harshlight.buildbin-libdir && E:\biocbld\bbs-2.9-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=Harshlight.buildbin-libdir Harshlight_1.26.0.tar.gz

StartedAt: 2012-01-09 06:28:51 -0800 (Mon, 09 Jan 2012)

EndedAt: 2012-01-09 06:29:05 -0800 (Mon, 09 Jan 2012)

EllapsedTime: 14.0 seconds

RetCode: 0

Status:  OK

PackageFile: Harshlight_1.26.0.zip

PackageFileSize: 381.8 KiB

* installing *source* package 'Harshlight' ...
** libs
gcc  -I"E:/biocbld/bbs-2.9-bioc/R/include"          -O3 -Wall  -std=gnu99 -mtune=core2 -c Harshlight.c -o Harshlight.o
Harshlight.c: In function 'norm':
Harshlight.c:1316:27: warning: unused variable 'sorted2'
Harshlight.c: In function 'report_overall_header':
Harshlight.c:1467:3: warning: unknown conversion type character ')' in format
Harshlight.c:1471:3: warning: unknown conversion type character ')' in format
Harshlight.c:1474:3: warning: unknown conversion type character ')' in format
Harshlight.c: In function 'chip_summary':
Harshlight.c:1532:3: warning: unknown conversion type character ')' in format
Harshlight.c:1542:3: warning: unknown conversion type character ')' in format
Harshlight.c:1543:3: warning: unknown conversion type character ')' in format
Harshlight.c: In function 'extended_stop':
Harshlight.c:1555:3: warning: unknown conversion type character ')' in format
gcc -shared -s -static-libgcc -o Harshlight.dll tmp.def Harshlight.o -LE:/biocbld/bbs-2.9-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.9-bioc/meat/Harshlight.buildbin-libdir/Harshlight/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "connection" in package 'graph' seems equivalent to one from package 'IRanges' and is not turning on duplicate class definitions for this class
Warning in .simpleDuplicateClass(def, prev) :
  A specification for S3 class "file" in package 'graph' seems equivalent to one from package 'IRanges' and is not turning on duplicate class definitions for this class
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
   'Harshlight.Rnw' 
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Harshlight' as Harshlight_1.26.0.zip

* DONE (Harshlight)