BHC 1.6.0
Rich Savage
| Snapshot Date: 2012-03-23 18:21:46 -0700 (Fri, 23 Mar 2012) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_9/madman/Rpacks/BHC | | Last Changed Rev: 59920 / Revision: 64395 | | Last Changed Date: 2011-10-31 15:59:03 -0700 (Mon, 31 Oct 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | OK | OK | |
| moscato1 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK |
| pitt | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BHC.buildbin-libdir BHC_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'BHC' ...
checking for gcc... gcc -arch i386 -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch i386 -std=gnu99 accepts -g... yes
checking for gcc -arch i386 -std=gnu99 option to accept ISO C89... none needed
checking for gcc -arch i386 -std=gnu99 option to support OpenMP... -fopenmp
checking whether OpenMP will work in this package... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c BlockCovarianceMatrix.cpp -o BlockCovarianceMatrix.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c CubicSplineTimecourseDataSet.cpp -o CubicSplineTimecourseDataSet.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c DataSet.cpp -o DataSet.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c DirichletProcessMixture.cpp -o DirichletProcessMixture.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c MultinomialDataSet.cpp -o MultinomialDataSet.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c Node.cpp -o Node.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c RobustCubicSplineTimecourseDataSet.cpp -o RobustCubicSplineTimecourseDataSet.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c RobustSquaredExponentialTimecourseDataSet.cpp -o RobustSquaredExponentialTimecourseDataSet.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c SquaredExponentialTimecourseDataSet.cpp -o SquaredExponentialTimecourseDataSet.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c TimecourseDataSet.cpp -o TimecourseDataSet.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c bhc.cpp -o bhc.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c gammaln.cpp -o gammaln.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c header.cpp -o header.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_CalculateHyperparameters.cpp -o multinomial_CalculateHyperparameters.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_OutputDendrogramInformation.cpp -o multinomial_OutputDendrogramInformation.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_ReadInData.cpp -o multinomial_ReadInData.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_bayeslink_binf.cpp -o multinomial_bayeslink_binf.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/i386 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_binevidence.cpp -o multinomial_binevidence.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BHC.so BlockCovarianceMatrix.o CubicSplineTimecourseDataSet.o DataSet.o DirichletProcessMixture.o MultinomialDataSet.o Node.o RobustCubicSplineTimecourseDataSet.o RobustSquaredExponentialTimecourseDataSet.o SquaredExponentialTimecourseDataSet.o TimecourseDataSet.o bhc.o gammaln.o header.o multinomial_CalculateHyperparameters.o multinomial_OutputDendrogramInformation.o multinomial_ReadInData.o multinomial_bayeslink_binf.o multinomial_binevidence.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/BHC.buildbin-libdir/BHC/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
*** tangling vignette sources ...
'bhc.Rnw'
** testing if installed package can be loaded
* DONE (BHC)
>>>>>>>
>>>>>>> FIXING LINKS FOR BHC.buildbin-libdir/BHC/libs/i386/BHC.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "BHC.buildbin-libdir/BHC/libs/i386/BHC.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "BHC.buildbin-libdir/BHC/libs/i386/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "BHC.buildbin-libdir/BHC/libs/i386/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "BHC.buildbin-libdir/BHC/libs/i386/BHC.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --no-multiarch --no-test-load --library=BHC.buildbin-libdir --libs-only BHC_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'BHC' ...
checking for gcc... gcc -arch ppc -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch ppc -std=gnu99 accepts -g... yes
checking for gcc -arch ppc -std=gnu99 option to accept ISO C89... none needed
checking for gcc -arch ppc -std=gnu99 option to support OpenMP... -fopenmp
checking whether OpenMP will work in this package... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - ppc
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c BlockCovarianceMatrix.cpp -o BlockCovarianceMatrix.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c CubicSplineTimecourseDataSet.cpp -o CubicSplineTimecourseDataSet.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c DataSet.cpp -o DataSet.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c DirichletProcessMixture.cpp -o DirichletProcessMixture.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c MultinomialDataSet.cpp -o MultinomialDataSet.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c Node.cpp -o Node.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c RobustCubicSplineTimecourseDataSet.cpp -o RobustCubicSplineTimecourseDataSet.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c RobustSquaredExponentialTimecourseDataSet.cpp -o RobustSquaredExponentialTimecourseDataSet.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c SquaredExponentialTimecourseDataSet.cpp -o SquaredExponentialTimecourseDataSet.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c TimecourseDataSet.cpp -o TimecourseDataSet.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c bhc.cpp -o bhc.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c gammaln.cpp -o gammaln.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c header.cpp -o header.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_CalculateHyperparameters.cpp -o multinomial_CalculateHyperparameters.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_OutputDendrogramInformation.cpp -o multinomial_OutputDendrogramInformation.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_ReadInData.cpp -o multinomial_ReadInData.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_bayeslink_binf.cpp -o multinomial_bayeslink_binf.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/ppc -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_binevidence.cpp -o multinomial_binevidence.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BHC.so BlockCovarianceMatrix.o CubicSplineTimecourseDataSet.o DataSet.o DirichletProcessMixture.o MultinomialDataSet.o Node.o RobustCubicSplineTimecourseDataSet.o RobustSquaredExponentialTimecourseDataSet.o SquaredExponentialTimecourseDataSet.o TimecourseDataSet.o bhc.o gammaln.o header.o multinomial_CalculateHyperparameters.o multinomial_OutputDendrogramInformation.o multinomial_ReadInData.o multinomial_bayeslink_binf.o multinomial_binevidence.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/BHC.buildbin-libdir/BHC/libs/ppc
* DONE (BHC)
>>>>>>>
>>>>>>> FIXING LINKS FOR BHC.buildbin-libdir/BHC/libs/ppc/BHC.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "BHC.buildbin-libdir/BHC/libs/ppc/BHC.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "BHC.buildbin-libdir/BHC/libs/ppc/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "BHC.buildbin-libdir/BHC/libs/ppc/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "BHC.buildbin-libdir/BHC/libs/ppc/BHC.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --no-multiarch --no-test-load --library=BHC.buildbin-libdir --libs-only BHC_1.6.0.tar.gz'
>>>>>>>
* installing *source* package 'BHC' ...
checking for gcc... gcc -arch x86_64 -std=gnu99
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -arch x86_64 -std=gnu99 accepts -g... yes
checking for gcc -arch x86_64 -std=gnu99 option to accept ISO C89... none needed
checking for gcc -arch x86_64 -std=gnu99 option to support OpenMP... -fopenmp
checking whether OpenMP will work in this package... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c BlockCovarianceMatrix.cpp -o BlockCovarianceMatrix.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c CubicSplineTimecourseDataSet.cpp -o CubicSplineTimecourseDataSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c DataSet.cpp -o DataSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c DirichletProcessMixture.cpp -o DirichletProcessMixture.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c MultinomialDataSet.cpp -o MultinomialDataSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c Node.cpp -o Node.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c RobustCubicSplineTimecourseDataSet.cpp -o RobustCubicSplineTimecourseDataSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c RobustSquaredExponentialTimecourseDataSet.cpp -o RobustSquaredExponentialTimecourseDataSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c SquaredExponentialTimecourseDataSet.cpp -o SquaredExponentialTimecourseDataSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c TimecourseDataSet.cpp -o TimecourseDataSet.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c bhc.cpp -o bhc.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c gammaln.cpp -o gammaln.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c header.cpp -o header.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_CalculateHyperparameters.cpp -o multinomial_CalculateHyperparameters.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_OutputDendrogramInformation.cpp -o multinomial_OutputDendrogramInformation.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_ReadInData.cpp -o multinomial_ReadInData.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_bayeslink_binf.cpp -o multinomial_bayeslink_binf.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Resources/include -I/Library/Frameworks/R.framework/Resources/include/x86_64 -fopenmp -I/usr/local/include -fPIC -g -O2 -Wall -fasm-blocks -c multinomial_binevidence.cpp -o multinomial_binevidence.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BHC.so BlockCovarianceMatrix.o CubicSplineTimecourseDataSet.o DataSet.o DirichletProcessMixture.o MultinomialDataSet.o Node.o RobustCubicSplineTimecourseDataSet.o RobustSquaredExponentialTimecourseDataSet.o SquaredExponentialTimecourseDataSet.o TimecourseDataSet.o bhc.o gammaln.o header.o multinomial_CalculateHyperparameters.o multinomial_OutputDendrogramInformation.o multinomial_ReadInData.o multinomial_bayeslink_binf.o multinomial_binevidence.o -fopenmp -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.9-bioc/meat/BHC.buildbin-libdir/BHC/libs/x86_64
* DONE (BHC)
>>>>>>>
>>>>>>> FIXING LINKS FOR BHC.buildbin-libdir/BHC/libs/x86_64/BHC.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgcc_s.1.dylib" "BHC.buildbin-libdir/BHC/libs/x86_64/BHC.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libgfortran.2.dylib" "BHC.buildbin-libdir/BHC/libs/x86_64/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.5.2.dylib" "BHC.buildbin-libdir/BHC/libs/x86_64/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.14/Resources/lib/libreadline.dylib" "BHC.buildbin-libdir/BHC/libs/x86_64/BHC.so"