ADaCGH2 1.3.0
Ramon Diaz-Uriarte
| Snapshot Date: 2011-06-21 19:21:48 -0700 (Tue, 21 Jun 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ADaCGH2 | | Last Changed Rev: 56008 / Revision: 56351 | | Last Changed Date: 2011-06-06 03:29:55 -0700 (Mon, 06 Jun 2011) |
| wilson2 | Linux (openSUSE 11.4) / x86_64 | ERROR | skipped | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | ERROR | skipped | skipped |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| moscato1 | Windows Server 2008 R2 Enterprise (64-bit) / x64 | ERROR | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | [ ERROR ] | skipped | skipped |
* checking for file ‘ADaCGH2/DESCRIPTION’ ... OK
* preparing ‘ADaCGH2’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to re-build vignettes
-----------------------------------
* installing *source* package ‘ADaCGH2’ ...
** libs
*** arch - i386
gcc-4.2 -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include -I/Library/Frameworks/R.framework/Versions/2.14/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c r_haarseg.c -o r_haarseg.o
r_haarseg.c: In function ‘ad_HaarConv’:
r_haarseg.c:65: warning: unused variable ‘totalNorm’
r_haarseg.c:152:8: warning: "/*" within comment
r_haarseg.c:176:8: warning: "/*" within comment
r_haarseg.c: In function ‘ad_FindLocalPeaks’:
r_haarseg.c:128: warning: unused variable ‘j’
r_haarseg.c: In function ‘ad_HaarConv’:
r_haarseg.c:64: warning: ‘highNonNormed’ may be used uninitialized in this function
r_haarseg.c:63: warning: ‘lowNonNormed’ may be used uninitialized in this function
r_haarseg.c:60: warning: ‘highWeightSum’ may be used uninitialized in this function
r_haarseg.c:59: warning: ‘lowWeightSum’ may be used uninitialized in this function
gcc-4.2 -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o ADaCGH2.so r_haarseg.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /private/tmp/RtmpVTTiLG/Rinst32156294/ADaCGH2/libs/i386
** R
Error in parse(outFile) :
/private/tmp/RtmpVTTiLG/Rbuild2c4a0edb/ADaCGH2/R/ADaCGH-2.R:2851:44: unexpected ‘||’
2850: ## Improved as per Duncan Murdoch's suggestion, email 2011-05-28
2851: if(any(is.na(x)) || any(is.infinite(x))) ||
^
ERROR: unable to collate and parse R files for package ‘ADaCGH2’
* removing ‘/private/tmp/RtmpVTTiLG/Rinst32156294/ADaCGH2’
-----------------------------------
ERROR: package installation failed