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leeBamViews 0.99.11
VJ Carey
Snapshot Date: 2011-07-02 23:15:14 -0700 (Sat, 02 Jul 2011)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/leeBamViews
Last Changed Rev: 1361 / Revision: 1676
Last Changed Date: 2010-10-14 21:15:12 -0700 (Thu, 14 Oct 2010)
lamb1 Linux (openSUSE 11.3) / x86_64  ERROR  skipped 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
petty Mac OS X Snow Leopard (10.6.7) / i386 [ ERROR ] skipped  skipped 

Summary

Package: leeBamViews
Version: 0.99.11
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data leeBamViews
StartedAt: 2011-07-03 00:28:36 -0700 (Sun, 03 Jul 2011)
EndedAt: 2011-07-03 00:33:31 -0700 (Sun, 03 Jul 2011)
EllapsedTime: 295.4 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'leeBamViews/DESCRIPTION' ... OK
* preparing 'leeBamViews':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: Rsamtools
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: BSgenome
Loading required package: biomaRt
Loading required package: grid

Error: processing vignette 'leeViews.Rnw' failed with diagnostics:
 chunk 4 (label=addso) 
Error in value[[3L]](cond) : 
  Request to BioMart web service failed. Verify if you are still connected to the internet.  Alternatively the BioMart web service is temporarily down.  Check http://www.biomart.org and verify if this website is available.
Execution halted