Package: davidTiling

Version: 1.2.12

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch davidTiling_1.2.12.tar.gz

StartedAt: 2011-07-03 00:38:39 -0700 (Sun, 03 Jul 2011)

EndedAt: 2011-07-03 00:46:40 -0700 (Sun, 03 Jul 2011)

EllapsedTime: 481.4 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: davidTiling.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.8-data-experiment/meat/davidTiling.Rcheck'
* using R version 2.13.0 (2011-04-13)
* using platform: x86_64-apple-darwin9.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'davidTiling/DESCRIPTION' ... OK
* this is package 'davidTiling' version '1.2.12'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'davidTiling' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 538.0Mb
  sub-directories of 1Mb or more:
    celfiles  305.9Mb
    data      229.5Mb
    website     2.3Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GOHyperG: no visible global function definition for
  'replaceSystematicByCommonName'
scoreSegments: no visible binding for global variable 'yeastFeatures'
scoreSegments: no visible binding for global variable 'chrs'
* checking Rd files ... NOTE
prepare_Rd: GOHyperG.Rd:34-35: Dropping empty section \examples
prepare_Rd: getGO.Rd:32-33: Dropping empty section \examples
prepare_Rd: scatterWithHist.Rd:19-20: Dropping empty section \details
prepare_Rd: scoreSegments.Rd:103-104: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: package needs dependence on R (>= 2.10)
* checking examples ... OK
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.8-data-experiment/meat/davidTiling.Rcheck/00check.log'
for details

* installing *source* package 'davidTiling' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: pixmap
Loading required package: AnnotationDbi
Loading required package: DBI

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (davidTiling)

name	user	system	elapsed
davidTiling	78.330	1.469	79.807
getAttributeField	0.001	0.000	0.001
gff	0.360	0.008	0.368
probeAnno	26.368	0.717	27.087
scatterWithHist	0.01	0.00	0.01
showDens	0.007	0.001	0.008
yeastFeatures	0.003	0.001	0.003