Package: affydata

Version: 1.11.11

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch affydata_1.11.11.tar.gz

StartedAt: 2011-07-03 00:36:08 -0700 (Sun, 03 Jul 2011)

EndedAt: 2011-07-03 00:37:43 -0700 (Sun, 03 Jul 2011)

EllapsedTime: 95.3 seconds

RetCode: 0

Status:  OK

CheckDir: affydata.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-data-experiment/meat/affydata.Rcheck'
* using R version 2.13.0 (2011-04-13)
* using platform: x86_64-apple-darwin9.8.0 (64-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'affydata/DESCRIPTION' ... OK
* this is package 'affydata' version '1.11.11'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'affydata' can be installed ... OK
* checking installed package size ... NOTE
  installed size is 23.6Mb
  sub-directories of 1Mb or more:
    celfiles       16.2Mb
    data            4.4Mb
    extracelfiles   2.7Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'affydata.pdf' from 230Kb to 123Kb
  consider running tools::compactPDF() on these files
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
'::' or ':::' import not declared from: Biobase
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'affydata' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
     Package    LibPath                                                        
[1,] "affydata" "/Users/biocbuild/bbs-2.8-data-experiment/meat/affydata.Rcheck"
     Item       Title                        
[1,] "Dilution" "AffyBatch instance Dilution"

* DONE (affydata)