Package: sagenhaft

Version: 1.21.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch sagenhaft_1.21.0.tar.gz

StartedAt: 2011-03-17 17:29:10 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 17:31:12 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 122.1 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: sagenhaft.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/sagenhaft.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'sagenhaft/DESCRIPTION' ... OK
* this is package 'sagenhaft' version '1.21.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'sagenhaft' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  7.2Mb
  sub-directories of 1Mb or more:
    data   7.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
remove.sage.artifacts: no visible binding for global variable
  'SAGEartifacts'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... WARNING
Files not of a type allowed in a 'data' directory:
  B6HypothalHFI.sage E15postHFI.sage E15postHFI.zip
Please use e.g. 'inst/extdata' for non-R data files
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/sagenhaft.Rcheck/00check.log'
for details

* installing *source* package 'sagenhaft' ...
** R
** data
** inst
** preparing package for lazy loading
Package SparseM (0.86) loaded.
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

    backsolve

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (sagenhaft)

name	user	system	elapsed
error.correction	67.521	2.297	69.821
extract.lib	0	0	0
sage.library	0.908	0.014	0.922
sage.library.comparison	4.189	0.153	4.342
sage.test	0.007	0.001	0.006
sage.utilities	0.002	0.000	0.002
sagelibrary.simulate	23.434	0.897	24.332