Package: plateCore

Version: 1.10.0

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch plateCore_1.10.0.tar.gz

StartedAt: 2011-10-20 15:57:14 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 16:00:29 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 195.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: plateCore.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/plateCore.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File type 'perl' not found or no open command associated with it.
File type 'perl' not found or no open command associated with it.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   plateCoreVig.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/plateCore.Rcheck/00check.log'
for details

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	3.97	0.01	3.99
applyControlGates-methods	15.59	0.00	15.59
compensate-methods	5.47	0.00	5.47
compensationSet	0.2	0.0	0.2
densityplot-methods	1.61	0.00	1.61
fixAutoFl-methods	5.95	0.00	5.99
flowPlate-class	3.35	0.00	3.34
flowPlate-method	3.39	0.00	3.39
fpbind-methods	7.39	0.02	7.41
getGroups-methods	1.44	0.01	1.45
gutterPlot-methods	1.37	0.00	1.38
mfiPlot-methods	15.77	0.00	15.78
on-methods	9.79	0.02	9.81
panel.densityplot.flowPlate	1.75	0.00	1.75
panel.xyplot.flowPlate	1.69	0.00	1.69
plateCore-package	3.28	0.00	3.28
plateSet-methods	3.26	0.00	3.27
plotPlate-methods	3.86	0.01	3.89
prepanel.densityplot.flowPlate	1.64	0.00	1.64
prepanel.xyplot.flowPlate	1.48	0.02	1.50
setControlGates-methods	3.79	0.00	3.78
summaryStats-methods	15.71	0.00	15.72
wellAnnotation-methods	1.33	0.00	1.32
xyplot-methods	1.57	0.02	1.60