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Package 268/444HostnameOS / ArchBUILDCHECKBUILD BIN
methVisual 1.3.0
Arie Zackay
Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/methVisual
Last Changed Rev: 50295 / Revision: 53825
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.6) / i386  OK [ OK ] OK 

Summary

Package: methVisual
Version: 1.3.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch methVisual_1.3.0.tar.gz
StartedAt: 2011-03-17 16:53:08 -0700 (Thu, 17 Mar 2011)
EndedAt: 2011-03-17 16:54:58 -0700 (Thu, 17 Mar 2011)
EllapsedTime: 110.7 seconds
RetCode: 0
Status:  OK 
CheckDir: methVisual.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/methVisual.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'methVisual/DESCRIPTION' ... OK
* this is package 'methVisual' version '1.3.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'methVisual' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

methVisual.Rcheck/00install.out:

* installing *source* package 'methVisual' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: proto
Loading required package: DBI
Loading required package: RSQLite
Loading required package: RSQLite.extfuns
Loading required package: chron
Warning in rgl.init(initValue) : RGL: GLX extension missing on server
Warning in fun(...) : error in rgl_init
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Warning messages:
1: In rgl.init(initValue) : RGL: GLX extension missing on server
2: In fun(...) : error in rgl_init

* DONE (methVisual)

methVisual.Rcheck/methVisual-Ex.timings:

nameusersystemelapsed
Cooccurrence0.6180.0080.625
MethAlignNW1.9630.0232.035
MethDataInput0.0420.0090.051
MethLollipops0.0110.0010.012
MethylQC1.6280.0151.643
cgInAlign0.0020.0000.003
cgMethFinder0.0000.0000.001
coversionGenom0.0010.0000.000
findNonAligned0.0030.0010.004
heatMapMeth0.0910.0020.093
makeDataMethGFF0.3440.0170.486
makeLocalExpDir0.0320.0100.041
makeTabFilePath0.0060.0010.007
matrixSNP0.3500.0090.358
methCA0.0150.0020.017
methData0.0020.0010.002
methFisherTest0.0380.0010.040
methWhitneyUTest0.0050.0010.006
plotAbsMethyl0.0050.0010.006
plotMatrixSNP0.7510.0120.763
readBisulfFASTA0.0380.0100.048
selectRefSeq0.0340.0090.042