Package: les

Version: 1.1.7

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch les_1.1.7.tar.gz

StartedAt: 2011-03-17 16:42:37 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 16:43:57 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 80.3 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: les.Rcheck

Warnings: 2

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/les.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'les/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'les' version '1.1.7'
* package encoding: UTF-8
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'les' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in Sys.setlocale("LC_CTYPE", "en_US.utf8") :
  OS reports request to set locale to "en_US.utf8" cannot be honored
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... WARNING
checking a package with encoding  'UTF-8'  in an ASCII locale

 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/les.Rcheck/00check.log'
for details

* installing *source* package 'les' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "les"
Creating a new generic function for "summary" in "les"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (les)

name	user	system	elapsed
Les-class	0.001	0.000	0.001
Les	0.026	0.002	0.028
chi2	0	0	0
ci	20.788	0.106	20.896
estimate	2.321	0.009	2.330
export	0.001	0.000	0.000
les-package	27.555	0.145	27.702
plot	2.449	0.003	2.452
regions	2.358	0.002	2.359
threshold	2.374	0.001	2.375
weighting	0.006	0.001	0.006