Package: imageHTS

Version: 1.2.0

Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch imageHTS_1.2.0.tar.gz

StartedAt: 2011-10-20 15:32:39 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 15:37:10 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 270.9 seconds

RetCode: 0

Status:  OK

CheckDir: imageHTS.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/imageHTS.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'imageHTS/DESCRIPTION' ... OK
* this is package 'imageHTS' version '1.2.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'imageHTS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: MASS
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'imageHTS' ...
** R
** inst
** preparing package for lazy loading
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (imageHTS)

name	user	system	elapsed
collectCellFeatures	0	0	0
countObjects	19.43	1.83	21.68
extractFeatures	39.36	4.00	43.82
fileHTS	4.65	0.00	7.53
getImageConf	2.33	0.00	2.33
getUnames	4.83	0.00	4.91
getWellFeatures	5.98	0.00	6.03
highlightSegmentation	0	0	0
installCellPicker	3.36	0.01	3.38
makeCellHTS	0	0	0
parseDCF	0.00	0.02	0.01
parseImageConf	2.35	0.00	2.36
popCellPicker	2.34	0.00	2.34
prw2uname	0	0	0
readLearnTS	0	0	0
segmentATH	0	0	0
segmentWells	13.78	0.57	14.57
segmentYeastBF	7.75	0.61	8.50
summarizeWells	0	0	0
zprime	4.61	0.02	4.67