Package: ibh

Version: 1.0.0

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings ibh_1.0.0.tar.gz

StartedAt: 2011-10-20 13:08:36 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 13:08:50 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 14.2 seconds

RetCode: 0

Status:  OK

CheckDir: ibh.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/ibh.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ibh/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ibh’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘ibh’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘ibh’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ibh)

name	user	system	elapsed
findEntry	0.024	0.000	0.024
ibh-package	1.936	0.056	2.368
ibh	0.012	0.000	0.013
ibhBioGRID	0.188	0.012	0.199
ibhClusterEval	0.396	0.020	0.416
ibhClusterEvalBioGRID	0.692	0.012	0.706
ibhForMultipleGeneLists	0.016	0.000	0.016
ibhForMultipleGeneListsBioGRID	0.22	0.00	0.22
readDirectedInteractionsFromCsv	0	0	0
readUndirectedInteractionsFromCsv	0	0	0