Package: goProfiles

Version: 1.14.0

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch goProfiles_1.14.0.tar.gz

StartedAt: 2011-10-20 14:44:19 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 14:45:52 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 93.5 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: goProfiles.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/goProfiles.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'goProfiles/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goProfiles' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'goProfiles' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   goProfiles.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/goProfiles.Rcheck/00check.log'
for details

* installing *source* package 'goProfiles' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
Warning: value of 'results' option should be lowercase
** testing if installed package can be loaded

* DONE (goProfiles)

name	user	system	elapsed
CD4ids	0.01	0.00	0.01
GOTermsList	0	0	0
basicProfile	4.24	0.09	7.10
compSummary	1.94	0.05	3.03
compareGOProfiles	1.79	0.03	1.83
compareGeneLists	8.08	0.17	9.62
compareProfilesLists	0	0	0
contractedProfile	0.72	0.02	0.74
conversionFunctions	0.03	0.02	0.04
drosophila	0.02	0.00	0.02
equivSummary	0	0	0
equivalentGOProfiles	1.61	0.00	1.66
expandedLevel	1.90	0.03	1.98
expandedProfile	0.38	0.00	0.37
fisherGOProfiles	6.43	0.14	6.58
fitGOProfile	0	0	0
hugoIds	0.04	0.00	0.03
mergeProfilesLists	3.96	0.11	4.08
ngenes	0.79	0.00	0.78
omimIds	0.00	0.01	0.02
plotProfiles	3.95	0.10	4.05
printProfiles	4.11	0.11	4.21
prostateIds	0.01	0.00	0.02