Package: globaltest

Version: 5.6.1

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch globaltest_5.6.1.tar.gz

StartedAt: 2011-10-20 14:43:54 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 14:46:21 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 147.0 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: globaltest.Rcheck

Warnings: 1

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/globaltest.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'globaltest/DESCRIPTION' ... OK
* this is package 'globaltest' version '5.6.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'globaltest' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   GlobalTest.Rnw
   GlobalTest_deprecated.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'D:/biocbld/bbs-2.8-bioc/meat/globaltest.Rcheck/00check.log'
for details

* installing *source* package 'globaltest' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a new generic function for "sort" in "globaltest"
Creating a new generic function for "model.matrix" in "globaltest"
Creating a new generic function for "coefficients" in "globaltest"
Creating a new generic function for "fitted.values" in "globaltest"
Creating a new generic function for "residuals" in "globaltest"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (globaltest)

name	user	system	elapsed
comparative	3.25	0.00	3.29
diagnostics	0.72	0.00	0.72
genesettesting	0	0	0
goodnessoffit	1.84	0.00	1.89
gt	0.75	0.00	0.75
gt.object-class	0.42	0.03	0.45
gtoptions	0	0	0
mlogit	0.02	0.00	0.02
multtest	0.54	0.00	0.54
v4_checkerboard	0.07	0.00	0.07
v4_geneplot	0.58	0.00	0.57
v4_globaltest	4.71	0.03	4.75
v4_multtest	0.58	0.00	0.58
v4_permutations	1.81	0.04	1.86
v4_regressionplot	1.55	0.00	1.55
v4_sampleplot	0.58	0.00	0.58
v4_sampling	38.47	0.00	38.48