gaga 1.11.0
David Rossell
| Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/gaga | | Last Changed Rev: 50295 / Revision: 53825 | | Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.6) / i386 | OK | [ OK ] | OK |
* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/gaga.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'gaga/DESCRIPTION' ... OK
* this is package 'gaga' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'gaga' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: checkfit.Rd:61-63: Dropping empty section \examples
prepare_Rd: dcgamma.Rd:53-54: Dropping empty section \examples
prepare_Rd: getpar.Rd:37-38: Dropping empty section \examples
prepare_Rd: posmeansGG.Rd:54-55: Dropping empty section \examples
prepare_Rd: powclasspred.Rd:66-67: Dropping empty section \examples
prepare_Rd: print.gagaclus.Rd:17-18: Dropping empty section \details
prepare_Rd: print.gagahyp.Rd:19-20: Dropping empty section \details
prepare_Rd: simnewsamples.Rd:45-46: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
* installing *source* package 'gaga' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c cseqdesma.c -o cseqdesma.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c cstat.c -o cstat.o
cstat.c: In function 'scanFloat':
cstat.c:494: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDouble':
cstat.c:502: warning: format not a string literal and no format arguments
cstat.c: In function 'fscanDouble':
cstat.c:510: warning: format not a string literal and no format arguments
cstat.c: In function 'scanInt':
cstat.c:520: warning: format not a string literal and no format arguments
cstat.c: In function 'fscanInt':
cstat.c:530: warning: format not a string literal and no format arguments
cstat.c: In function 'scanLong':
cstat.c:541: warning: format not a string literal and no format arguments
cstat.c: In function 'scanArray':
cstat.c:558: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDoubleArray':
cstat.c:570: warning: format not a string literal and no format arguments
cstat.c: In function 'scanDoubleMatrix':
cstat.c:606: warning: format not a string literal and no format arguments
cstat.c: In function 'scanIntArray':
cstat.c:631: warning: format not a string literal and no format arguments
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o gaga.so cseqdesma.o cstat.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/gaga.Rcheck/gaga/libs/i386
** R
** inst
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (gaga)