Package: flowPlots

Version: 1.0.0

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings flowPlots_1.0.0.tar.gz

StartedAt: 2011-10-20 12:37:52 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 12:38:35 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 42.8 seconds

RetCode: 0

Status:  OK

CheckDir: flowPlots.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/flowPlots.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘flowPlots/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘flowPlots’ version ‘1.0.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘flowPlots’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘flowPlots’ ...
** R
** data
**  moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (flowPlots)

name	user	system	elapsed
GroupListBoxplot	0.104	0.008	0.111
StackedData-class	11.684	0.028	11.792
adultsNeonates	0.004	0.000	0.002
computeMarginalData-methods	2.816	0.012	2.828
computeMarkers-methods	0	0	0
computePFDData-methods	2.405	0.000	2.403
computePFDGroupStatsList	0.312	0.012	0.336
computePFDPartsData-methods	3.344	0.004	3.361
computeProfileData-methods	3.220	0.008	3.238
legendPFDStatsGroupNames	0.160	0.008	0.183
makeBarplotData	0.012	0.004	0.015
makeDataList	0.08	0.00	0.08
makeTernaryData	0.152	0.008	0.161
marginalDF	0.000	0.000	0.002
marginalData-methods	0.004	0.000	0.003
markerMatrix	0.000	0.004	0.002
markers-methods	0.000	0.000	0.002
pfdDF	0.000	0.004	0.002
pfdData-methods	0.004	0.000	0.002
pfdPartsData-methods	0.000	0.000	0.003
pfdPartsList	0.004	0.000	0.002
profileDF	0.004	0.000	0.002
profileData-methods	0.000	0.000	0.005
readStackedData-methods	0.040	0.000	0.041
stackedData-methods	0.068	0.000	0.070