Package: ecolitk

Version: 1.24.0

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch ecolitk_1.24.0.tar.gz

StartedAt: 2011-10-20 14:06:18 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 14:06:48 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 30.6 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: ecolitk.Rcheck

Warnings: 2

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/ecolitk.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ecolitk/DESCRIPTION' ... OK
* this is package 'ecolitk' version '1.24.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ecolitk' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.buildGENEPRODFUN: possible error in strsplit(line, "\t", extended =
  TRUE): unused argument(s) (extended = TRUE)
* checking Rd files ... NOTE
prepare_Rd: multiFun.Rd:16-18: Dropping empty section \details
prepare_Rd: polar2xy.Rd:28-33: Dropping empty section \value
prepare_Rd: polygonChrom.Rd:59: Dropping empty section \seealso
prepare_Rd: wstringapply.Rd:24-25: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
  Warning: large data file(s) saved inefficiently:
                         size ASCII compress
  ecoli.m52.genome.rda  1.3Mb  TRUE     gzip
  ecoligenomeCHRLOC.rda 122Kb  TRUE     gzip
* checking examples ... OK
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: affy
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
   ecolitk.Rnw

* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  'D:/biocbld/bbs-2.8-bioc/meat/ecolitk.Rcheck/00check.log'
for details

* installing *source* package 'ecolitk' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ecolitk)

name	user	system	elapsed
ecoli.data	0.52	0.02	0.53
ecoligenome.operon	0.11	0.00	0.11
linkedmultiget	0.21	0.00	0.22
multiFun	0	0	0
pointsCircle	0.08	0.00	0.08
polar2xy	0	0	0
polygonChrom	0.28	0.00	0.28