Package: cellHTS2

Version: 2.15.5

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cellHTS2_2.15.5.tar.gz

StartedAt: 2011-03-17 15:51:04 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 15:54:57 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 233.9 seconds

RetCode: 0

Status:  OK

CheckDir: cellHTS2.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/cellHTS2.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.15.5'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    data     1.2Mb
    doc      1.9Mb
    KcViab   2.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

* DONE (cellHTS2)

name	user	system	elapsed
Bscore	2.089	0.010	2.099
ROC-class	0.328	0.006	0.334
ROC	1.309	0.002	1.312
annotate	0.986	0.003	0.988
bdgpbiomart	0.213	0.002	0.215
buildCellHTS2	0.413	0.001	0.413
cellHTS-class	0.834	0.012	0.846
configurationAsScreenPlot	0.658	0.005	0.663
configure	0.722	0.004	0.726
convertOldCellHTS	1.175	0.001	1.176
convertWellCoordinates	0.001	0.000	0.001
data-KcViab	0.128	0.001	0.130
data-KcViabSmall	0.010	0.000	0.011
data-dualCh	0.011	0.001	0.011
data-oldKcViabSmall	0.009	0.001	0.010
getDynamicRange	0.687	0.001	0.688
getEnVisionRawData	0.031	0.002	0.033
getMeasureRepAgreement	0.685	0.001	0.686
getTopTable	1.469	0.005	1.474
getZfactor	0.430	0.001	0.431
imageScreen	1.117	0.002	1.118
normalizePlates	1.751	0.003	1.754
oneRowPerId	0.004	0.000	0.004
plotSpatialEffects	1.349	0.002	1.352
readHTAnalystData	1.228	0.001	1.229
readPlateList	0.859	0.004	0.865
scoreReplicates	1.093	0.001	1.093
scores2calls	1.186	0.001	1.187
setSettings	0.005	0.003	0.009
spatialNormalization	1.541	0.002	1.541
summarizeChannels	1.991	0.002	1.992
summarizeReplicates	1.166	0.001	1.167
templateDescriptionFile	0.001	0.001	0.001
updateCellHTS	0.022	0.001	0.023
write.tabdel	0.024	0.001	0.025
writeReport	0.010	0.001	0.011
writeTab	0.023	0.001	0.024