Package: cellHTS

Version: 1.22.0

Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings --no-multiarch cellHTS_1.22.0.tar.gz

StartedAt: 2011-10-20 14:28:07 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 14:29:47 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 100.2 seconds

RetCode: 0

Status:  OK

CheckDir: cellHTS.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/cellHTS.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellHTS/DESCRIPTION' ... OK
* this is package 'cellHTS' version '1.22.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS' can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.8Mb
  sub-directories of 1Mb or more:
    data     1.4Mb
    doc      4.9Mb
    KcViab   2.0Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: oneRowPerId.Rd:19: Dropping empty section \details
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'cellHTS' ...
** R
** data
** inst
** preparing package for lazy loading
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Scalable Robust Estimators with High Breakdown Point (version 1.3-01)

* DONE (cellHTS)

name	user	system	elapsed
Bscore	0.56	0.00	0.56
ROC	0.02	0.00	0.02
annotate	0	0	0
bdgpbiomart	0.33	0.00	0.33
configure	0	0	0
data-KcViab	0.29	0.00	0.29
data-KcViabSmall	0.02	0.00	0.02
getEnVisionRawData	0.03	0.00	0.03
getLibraryPlate	0.03	0.00	0.03
getMatrix	0	0	0
imageScreen	0.09	0.01	0.11
normalizeChannels	0	0	0
normalizePlates	0.02	0.02	0.03
oneRowPerId	0.02	0.00	0.02
plotPlateLibrary	1.10	0.00	1.14
plotSpatialEffects	0.49	0.00	0.48
print.cellHTS	0.01	0.00	0.02
readPlateData	0.15	0.02	0.15
screenMatch	0.32	0.00	0.33
summarizeChannels	0	0	0
summarizeReplicates	0.07	0.01	0.08
write.tabdel	0.03	0.00	0.03
writeReport	0.01	0.00	0.02
writeTab	0.03	0.00	0.03