Package: a4

Version: 1.1.2

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch a4_1.1.2.tar.gz

StartedAt: 2011-10-20 13:01:03 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 13:03:50 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 167.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: a4.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/a4.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'a4/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'a4' version '1.1.2'
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'a4' can be installed ... WARNING
Found the following significant warnings:
  Warning: replacing previous import 'head' when loading 'utils'
  Warning: replacing previous import 'tail' when loading 'utils'
See '/Users/biocbuild/bbs-2.8-bioc/meat/a4.Rcheck/00install.out' for details.
* checking installed package size ... NOTE
  installed size is  6.9Mb
  sub-directories of 1Mb or more:
    doc   6.8Mb
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... OK
* checking sizes of PDF files under inst/doc ... NOTE
  'qpdf' made some significant size reductions:
     compacted 'a4vignette.pdf' from 6.7Mb to 1.0Mb
  consider running tools::compactPDF() on these files
* checking examples ... NONE
* checking for unstated dependencies in vignettes ... NOTE
'library' or 'require' call not declared from: Cairo
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/a4.Rcheck/00check.log'
for details

* installing *source* package 'a4' ...
** R
** inst
** preparing package for lazy loading

mpm version 1.0-18

Warning: replacing previous import 'head' when loading 'utils'
Warning: replacing previous import 'tail' when loading 'utils'

a4Base version 1.0.1

** help
No man pages found in package  'a4' 
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

mpm version 1.0-18


a4Base version 1.0.1

Warning messages:
1: replacing previous import 'head' when loading 'utils' 
2: replacing previous import 'tail' when loading 'utils' 

* DONE (a4)