Ruuid 1.29.0
Biocore Team c/o BioC user list
| Snapshot Date: 2011-03-17 11:16:30 -0700 (Thu, 17 Mar 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Ruuid | | Last Changed Rev: 50725 / Revision: 53825 | | Last Changed Date: 2010-11-06 14:29:12 -0700 (Sat, 06 Nov 2010) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.6) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=Ruuid.buildbin-libdir Ruuid_1.29.0.tar.gz'
>>>>>>>
* installing *source* package 'Ruuid' ...
checking for pkg-config... /usr/local/bin/pkg-config
checking for glib-config... /usr/local/bin/glib-config
checking for glib-2.0... yes
checking PKG_CFLAGS... -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include
checking PKG_LIBS... -L/Library/Frameworks/GTK+.framework/Resources/lib -lglib-2.0 -lintl
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking /usr/include/unistd.h usability... yes
checking /usr/include/unistd.h presence... yes
checking for /usr/include/unistd.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c Rinit.c -o Rinit.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c Ruuid.c -o Ruuid.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c clear.c -o clear.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c compare.c -o compare.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c copy.c -o copy.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c gen_uuid.c -o gen_uuid.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c isnull.c -o isnull.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c pack.c -o pack.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c parse.c -o parse.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c unpack.c -o unpack.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c unparse.c -o unparse.o
unparse.c: In function 'uuid_unparse':
unparse.c:21: warning: format '%08x' expects type 'unsigned int', but argument 5 has type 'guint32'
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c uuid_time.c -o uuid_time.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Ruuid.so Rinit.o Ruuid.o clear.o compare.o copy.o gen_uuid.o isnull.o pack.o parse.o unpack.o unparse.o uuid_time.o -L/Library/Frameworks/GTK+.framework/Resources/lib -lglib-2.0 -lintl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/Ruuid.buildbin-libdir/Ruuid/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (Ruuid)
>>>>>>>
>>>>>>> FIXING LINKS FOR Ruuid.buildbin-libdir/Ruuid/libs/i386/Ruuid.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/i386/Ruuid.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/i386/Ruuid.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/i386/Ruuid.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/i386/Ruuid.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=Ruuid.buildbin-libdir --libs-only Ruuid_1.29.0.tar.gz'
>>>>>>>
* installing *source* package 'Ruuid' ...
checking for pkg-config... /usr/local/bin/pkg-config
checking for glib-config... /usr/local/bin/glib-config
checking for glib-2.0... yes
checking PKG_CFLAGS... -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include
checking PKG_LIBS... -L/Library/Frameworks/GTK+.framework/Resources/lib -lglib-2.0 -lintl
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking /usr/include/unistd.h usability... yes
checking /usr/include/unistd.h presence... yes
checking for /usr/include/unistd.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c Rinit.c -o Rinit.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c Ruuid.c -o Ruuid.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c clear.c -o clear.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c compare.c -o compare.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c copy.c -o copy.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c gen_uuid.c -o gen_uuid.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c isnull.c -o isnull.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c pack.c -o pack.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c parse.c -o parse.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c unpack.c -o unpack.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c unparse.c -o unparse.o
unparse.c: In function 'uuid_unparse':
unparse.c:21: warning: format '%08x' expects type 'unsigned int', but argument 5 has type 'guint32'
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c uuid_time.c -o uuid_time.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Ruuid.so Rinit.o Ruuid.o clear.o compare.o copy.o gen_uuid.o isnull.o pack.o parse.o unpack.o unparse.o uuid_time.o -L/Library/Frameworks/GTK+.framework/Resources/lib -lglib-2.0 -lintl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/Ruuid.buildbin-libdir/Ruuid/libs/ppc
* DONE (Ruuid)
>>>>>>>
>>>>>>> FIXING LINKS FOR Ruuid.buildbin-libdir/Ruuid/libs/ppc/Ruuid.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/ppc/Ruuid.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/ppc/Ruuid.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/ppc/Ruuid.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/ppc/Ruuid.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=Ruuid.buildbin-libdir --libs-only Ruuid_1.29.0.tar.gz'
>>>>>>>
* installing *source* package 'Ruuid' ...
checking for pkg-config... /usr/local/bin/pkg-config
checking for glib-config... /usr/local/bin/glib-config
checking for glib-2.0... yes
checking PKG_CFLAGS... -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include
checking PKG_LIBS... -L/Library/Frameworks/GTK+.framework/Resources/lib -lglib-2.0 -lintl
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking how to run the C preprocessor... gcc -E
checking for egrep... grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking /usr/include/unistd.h usability... yes
checking /usr/include/unistd.h presence... yes
checking for /usr/include/unistd.h... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c Rinit.c -o Rinit.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c Ruuid.c -o Ruuid.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c clear.c -o clear.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c compare.c -o compare.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c copy.c -o copy.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c gen_uuid.c -o gen_uuid.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c isnull.c -o isnull.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c pack.c -o pack.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c parse.c -o parse.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c unpack.c -o unpack.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c unparse.c -o unparse.o
unparse.c: In function 'uuid_unparse':
unparse.c:21: warning: format '%08x' expects type 'unsigned int', but argument 5 has type 'guint32'
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64 -I/usr/local/include -I/Library/Frameworks/GTK+.framework/Resources/include/glib-2.0 -I/Library/Frameworks/GTK+.framework/Resources/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -g -O2 -Wall -pedantic -c uuid_time.c -o uuid_time.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o Ruuid.so Rinit.o Ruuid.o clear.o compare.o copy.o gen_uuid.o isnull.o pack.o parse.o unpack.o unparse.o uuid_time.o -L/Library/Frameworks/GTK+.framework/Resources/lib -lglib-2.0 -lintl -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/Ruuid.buildbin-libdir/Ruuid/libs/x86_64
* DONE (Ruuid)
>>>>>>>
>>>>>>> FIXING LINKS FOR Ruuid.buildbin-libdir/Ruuid/libs/x86_64/Ruuid.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/x86_64/Ruuid.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/x86_64/Ruuid.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/x86_64/Ruuid.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "Ruuid.buildbin-libdir/Ruuid/libs/x86_64/Ruuid.so"