Package: RTCA

Version: 1.3.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch RTCA_1.3.0.tar.gz

StartedAt: 2011-03-17 17:27:48 -0700 (Thu, 17 Mar 2011)

EndedAt: 2011-03-17 17:28:31 -0700 (Thu, 17 Mar 2011)

EllapsedTime: 43.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: RTCA.Rcheck

Warnings: 2

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/RTCA.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'RTCA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'RTCA' version '1.3.0'
* package encoding: UTF-8
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'RTCA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in Sys.setlocale("LC_CTYPE", "en_US.utf8") :
  OS reports request to set locale to "en_US.utf8" cannot be honored
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... WARNING
checking a package with encoding  'UTF-8'  in an ASCII locale

 OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'essentials.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/RTCA.Rcheck/00check.log'
for details

* installing *source* package 'RTCA' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a new generic function for "time" in "RTCA"
Creating a new generic function for "plot" in "RTCA"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (RTCA)

name	user	system	elapsed
RTCA-class	0.388	0.002	0.389
RTCAtimeline-class	0.003	0.000	0.002
alphaNames	0.007	0.000	0.007
combineRTCA	0.433	0.006	0.439
controlView	0.380	0.004	0.383
derivativeTransform	0.323	0.002	0.326
factor2numeric	0.002	0.001	0.002
interpolationTransform	0.736	0.034	0.771
nearestTimeIndex	0.384	0.005	0.389
parseRTCA	0.361	0.002	0.363
plateView	0.303	0.001	0.304
plotGridEffect	0.866	0.009	0.906
ratioTransform	0.314	0.012	0.326
rgrTransform	0.745	0.021	0.766
sliceRTCA	0.309	0.006	0.316
smoothTransform	0.499	0.010	0.509
spectramaxImport	0.014	0.004	0.018