Package: PCpheno

Version: 1.14.0

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings PCpheno_1.14.0.tar.gz

StartedAt: 2011-10-20 13:53:36 -0700 (Thu, 20 Oct 2011)

EndedAt: 2011-10-20 13:56:22 -0700 (Thu, 20 Oct 2011)

EllapsedTime: 165.7 seconds

RetCode: 0

Status:  OK

CheckDir: PCpheno.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/PCpheno.Rcheck’
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘PCpheno/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘PCpheno’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘PCpheno’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘PCpheno’ ...
** R
** data
** inst
** preparing package for lazy loading

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (PCpheno)

name	user	system	elapsed
CoHyperGResult-class	0.964	0.028	1.054
Dudley	0.004	0.008	0.012
Giaever	0.080	0.004	0.085
HI	0.004	0.000	0.003
KEGG2SCISI	0.472	0.028	0.532
Kastenmayer	0.012	0.000	0.021
Lesage	0.008	0.000	0.007
Osterberg	0.016	0.000	0.020
SGDphenoL	0.016	0.000	0.018
YEASTOHNOLOG	0.008	0.000	0.008
buildFDMat	0.344	0.000	0.345
categoryToEntrezBuilder	0.556	0.004	0.611
complexStatus	1.240	0.036	1.298
deResult-class	0.196	0.004	0.199
densityEstimate	2.512	0.012	2.533
getDescr	0.860	0.012	0.898
getFDgene	0.092	0.004	0.099
graphTheory	13.861	0.200	14.095
gtResult-class	13.817	0.708	14.897
overlap	0.000	0.000	0.001
plot	2.436	0.000	2.458
ppiInteraction	6.685	0.020	6.962
reduceM	0.000	0.000	0.001
truncName	0	0	0