MSnbase 1.0.7
Laurent Gatto
| Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/MSnbase | | Last Changed Rev: 58235 / Revision: 59457 | | Last Changed Date: 2011-09-20 00:40:52 -0700 (Tue, 20 Sep 2011) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ ERROR ] | skipped | skipped |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
* checking for file 'MSnbase/DESCRIPTION' ... OK
* preparing 'MSnbase':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
make demo
make[1]: Entering directory `/cygdrive/d/biocbld/bbs-2.8-bioc/tmpdir/RtmpVFhLvV/Rbuild3b5f584e/MSnbase/inst/doc'
mkdir -p sweave-cache/figs/
cp ./MSnbase-demo/MSnbase-demo.Rnw .
"D:/biocbld/BBS-2˜1.8-B/R/bin/Rscript" --vanilla -e "library(pgfSweave); pgfSweave('MSnbase-demo.Rnw');"
Loading required package: stashR
Loading required package: methods
Loading required package: filehash
filehash: Simple key-value database (2.2 2011-07-21)
A Set of Tools for Administering SHared Repositories (0.3-4 2011-07-15)
Loading required package: highlight
Loading required package: tools
Loading required package: codetools
Loading required package: parser
Loading required package: Rcpp
Loading required package: optparse
Loading required package: getopt
Loading required package: formatR
tikzDevice: A Device for R Graphics Output in PGF/TikZ Format (v0.6.1)
Checking for a LaTeX compiler...
A working LaTeX compiler was found by checking:
The PATH using the command pdflatex
Global option tikzLatex set to:
C:\PROGRA˜2\MIKTEX˜1.9\miktex\bin\pdflatex.exe
MiKTeX-pdfTeX 2.9.4052 (1.40.11) (MiKTeX 2.9)
Copyright (C) 1982 D. E. Knuth, (C) 1996-2006 Han The Thanh
A working XeLaTeX compiler was found by checking:
The PATH using the command xelatex
Global option tikzXelatex set to:
C:\PROGRA˜2\MIKTEX˜1.9\miktex\bin\xelatex.exe
MiKTeX-XeTeX 2.9.4052 (0.9997.4) (MiKTeX 2.9)
Copyright (C) 1982 D. E. Knuth, (C) 1994-2006 by SIL International
Error : .onLoad failed in loadNamespace() for 'pgfSweave', details:
call: requirePGFVersion("2.10")
error: PGF >= 2.10 is required to use pgfSweave
In addition: Warning message:
running command 'C:\PROGRA˜2\MIKTEX˜1.9\miktex\bin\pdflatex.exe -interaction=batchmode -output-directory D:\biocbld\bbs-2.8-bioc\tmpdir\Rtmpt4G6WN test-for-pgf.tex' had status 1
Error: package/namespace load failed for 'pgfSweave'
Execution halted
make[1]: *** [demo] Error 1
make[1]: Leaving directory `/cygdrive/d/biocbld/bbs-2.8-bioc/tmpdir/RtmpVFhLvV/Rbuild3b5f584e/MSnbase/inst/doc'
make: *** [all] Error 2
Error in tools::buildVignettes(dir = ".") : running 'make' failed
Execution halted