BioC 2.8: CHECK report for HTqPCR on lamb1

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/HTqPCR.Rcheck’
* using R version 2.13.0 (2011-04-13)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTqPCR’ version ‘1.6.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘HTqPCR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘HTqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation("pkgname")'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

name	user	system	elapsed
HTqPCR-package	4.660	0.016	4.673
cbind	0.044	0.000	0.047
changeCtLayout	0.048	0.000	0.049
clusterCt	0.652	0.008	0.658
filterCategory	0.088	0.004	0.091
filterCtData	0.228	0.000	0.229
heatmapSig	1.668	0.000	1.679
limmaCtData	0.864	0.000	0.897
mannwhitneyCtData	1.356	0.004	1.367
normalizeCtData	0.404	0.000	0.401
plotCVBoxes	0.172	0.004	0.176
plotCtArray	0.140	0.004	0.142
plotCtBoxes	0.060	0.000	0.061
plotCtCard	0.056	0.000	0.053
plotCtCategory	3.376	0.020	3.492
plotCtCor	0.092	0.008	0.099
plotCtDensity	0.037	0.000	0.037
plotCtHeatmap	3.268	0.028	3.303
plotCtHistogram	0.012	0.000	0.010
plotCtOverview	0.120	0.000	0.118
plotCtPCA	0.044	0.000	0.042
plotCtPairs	0.708	0.000	0.707
plotCtRQ	0.372	0.000	0.374
plotCtReps	0.128	0.000	0.130
plotCtScatter	0.028	0.000	0.026
plotCtSignificance	0.472	0.000	0.473
plotCtVariation	0.752	0.000	0.749
plotGenes	0.024	0.004	0.030
qPCRpros	0.004	0.000	0.004
qPCRraw	0.004	0.000	0.005
qPCRset-class	0.032	0.000	0.028
readCtData	0.072	0.000	0.072
setCategory	6.596	0.004	6.614
ttestCtData	1.152	0.000	1.159

Summary

Command output