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Package 190/467HostnameOS / ArchBUILDCHECKBUILD BIN
GenomicRanges 1.4.8
Biocore Team c/o BioC user list
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/GenomicRanges
Last Changed Rev: 57515 / Revision: 59457
Last Changed Date: 2011-08-17 19:49:12 -0700 (Wed, 17 Aug 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GenomicRanges
Version: 1.4.8
Command: rm -rf GenomicRanges.buildbin-libdir && mkdir GenomicRanges.buildbin-libdir && E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD INSTALL --build --no-multiarch --library=GenomicRanges.buildbin-libdir GenomicRanges_1.4.8.tar.gz
StartedAt: 2011-10-20 17:50:33 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 17:50:52 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 19.0 seconds
RetCode: 0
Status:  OK  
PackageFile: GenomicRanges_1.4.8.zip
PackageFileSize: 1.461 MiB

Command output

* installing *source* package 'GenomicRanges' ...
** libs
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"    -I"E:/biocbld/bbs-2.8-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"    -I"E:/biocbld/bbs-2.8-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -c R_init_GenomicRanges.c -o R_init_GenomicRanges.o
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"    -I"E:/biocbld/bbs-2.8-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -c cigar_utils.c -o cigar_utils.o
cigar_utils.c: In function 'cigar_to_width':
cigar_utils.c:841:23: warning: 'width' may be used uninitialized in this function
cigar_utils.c: In function 'cigar_qnarrow':
cigar_utils.c:311:17: warning: 'OPL' may be used uninitialized in this function
cigar_utils.c:311:17: note: 'OPL' was declared here
cigar_utils.c:312:7: warning: 'OP' may be used uninitialized in this function
cigar_utils.c:312:7: note: 'OP' was declared here
cigar_utils.c: In function 'cigar_narrow':
cigar_utils.c:471:17: warning: 'OPL' may be used uninitialized in this function
cigar_utils.c:471:17: note: 'OPL' was declared here
cigar_utils.c:472:7: warning: 'OP' may be used uninitialized in this function
cigar_utils.c:472:7: note: 'OP' was declared here
cigar_utils.c: In function 'ref_locs_to_query_locs':
cigar_utils.c:1168:9: warning: 'n' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.8-bioc/R/include"    -I"E:/biocbld/bbs-2.8-bioc/R/library/IRanges/include"      -O3 -Wall  -std=gnu99 -c transcript_utils.c -o transcript_utils.o
transcript_utils.c: In function 'tlocs2rlocs':
transcript_utils.c:207:44: warning: 'nlocs' may be used uninitialized in this function
gcc -shared -s -static-libgcc -o GenomicRanges.dll tmp.def IRanges_stubs.o R_init_GenomicRanges.o cigar_utils.o transcript_utils.o -LE:/biocbld/bbs-2.8-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/GenomicRanges.buildbin-libdir/GenomicRanges/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'GenomicRanges' as GenomicRanges_1.4.8.zip

* DONE (GenomicRanges)