Package: GenomeGraphs

Version: 1.11.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GenomeGraphs_1.11.0.tar.gz

StartedAt: 2011-03-13 16:16:31 -0700 (Sun, 13 Mar 2011)

EndedAt: 2011-03-13 16:20:36 -0700 (Sun, 13 Mar 2011)

EllapsedTime: 244.6 seconds

RetCode: 0

Status:  OK

CheckDir: GenomeGraphs.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/GenomeGraphs.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-03-06 r54683)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GenomeGraphs/DESCRIPTION' ... OK
* this is package 'GenomeGraphs' version '1.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GenomeGraphs' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'GenomeGraphs' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GenomeGraphs)

name	user	system	elapsed
AnnotationTrack-class	0.002	0.000	0.001
BaseTrack-class	0	0	0
DisplayPars-class	0.001	0.000	0.001
DisplayPars	0.372	0.012	3.979
ExonArray-class	0.002	0.000	0.003
Gene-class	0	0	0
GeneModel-class	0.151	0.003	0.154
GeneRegion-class	0	0	0
GenericArray-class	0.001	0.000	0.001
GenomeAxis-class	0.001	0.001	0.000
HighlightRegion-class	0.000	0.000	0.002
Ideogram-class	0.001	0.000	0.000
ImplementsTrackOverlay-class	0.001	0.000	0.001
Legend-class	0.000	0.000	0.001
MappedRead-class	0.000	0.001	0.000
Overlay-class	0.001	0.000	0.001
RectangleOverlay-class	0.001	0.000	0.001
Segmentation-class	0.001	0.000	0.001
Smoothing-class	0.001	0.000	0.001
TextOverlay-class	0.001	0.000	0.001
Title-class	0.001	0.000	0.001
TrackOverlay-class	0.000	0.001	0.001
Transcript-class	0	0	0
TranscriptRegion-class	0.001	0.000	0.001
cn	0	0	0
exonProbePos	0	0	0
gdObject-class	0.002	0.001	0.002
gdPlot	1.826	0.021	198.752
getPar	0.002	0.000	0.002
ideogramTab	0.002	0.001	0.002
intensity	0.000	0.000	0.001
makeAnnotationTrack	0.029	0.000	0.028
makeBaseTrack	0.001	0.001	0.002
makeExonArray	0.001	0.000	0.001
makeGene	0.001	0.000	0.001
makeGeneModel	0.001	0.000	0.000
makeGeneRegion	0.001	0.001	0.001
makeGenericArray	0.001	0.000	0.001
makeGenomeAxis	0.001	0.000	0.001
makeIdeogram	0.001	0.000	0.001
makeLegend	0.000	0.000	0.001
makeRectangleOverlay	0.096	0.001	0.098
makeSegmentation	0.081	0.001	0.082
makeSmoothing	0.104	0.001	0.105
makeTextOverlay	0.088	0.001	0.090
makeTitle	0.001	0.000	0.001
makeTranscript	0.000	0.000	0.001
probestart	0	0	0
segEnd	0	0	0
segStart	0	0	0
segments	0.000	0.000	0.001
seqDataEx	0.032	0.000	0.033
setPar	0.016	0.000	0.016
showDisplayOptions	0.001	0.000	0.001
unrData	0	0	0
unrNProbes	0	0	0
unrPositions	0	0	0
yeastCons1	0	0	0