GeneSpring 2.26.0
Thon de Boer
| Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/GeneSpring | | Last Changed Rev: 54800 / Revision: 59457 | | Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011) |
| lamb1 | Linux (openSUSE 11.3) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| gewurz | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | [ WARNINGS ] | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/GeneSpring.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneSpring/DESCRIPTION' ... OK
* this is package 'GeneSpring' version '2.26.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneSpring' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: GSload.exp.Rd:90-91: Dropping empty section \examples
prepare_Rd: GSload.genelist.Rd:70-71: Dropping empty section \seealso
prepare_Rd: GSload.int.Rd:78-79: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... WARNING
Codoc mismatches from documentation object 'GSload.exp':
GSload.exp
Code: function(filename = "GS_R_in.txt", EOF = "///", chunk = 1)
Docs: function(filename = "GS_R_in.txt", EOF = "///", chunk = 1,
append = FALSE)
Argument names in docs not in code:
append
GSload.expBC
Code: function(filename = "GS_R_in.txt", EOF = "///", chunk = 1)
Docs: function(filename = "GS_R_in.txt", EOF = "///", chunk = 1,
append = TRUE)
Argument names in docs not in code:
append
Codoc mismatches from documentation object 'GSload.int':
GSload.int
Code: function(filename = "GS_R_in.txt", EOF = "///", chunk = 1)
Docs: function(filename = "GS_R_in.txt")
Argument names in code not in docs:
EOF chunk
GSload.intBC
Code: function(filename = "GS_R_in.txt", EOF = "///", chunk = 1)
Docs: function(filename = "GS_R_in.txt", what = "nor")
Argument names in code not in docs:
EOF chunk
Argument names in docs not in code:
what
Mismatches in argument names:
Position: 2 Code: EOF Docs: what
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignette(s) without corresponding PDF:
GeneSpring.Rnw
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There were 2 warnings, see
'D:/biocbld/bbs-2.8-bioc/meat/GeneSpring.Rcheck/00check.log'
for details