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Package 98/467HostnameOS / ArchBUILDCHECKBUILD BIN
CMA 1.10.0
Christoph Bernau
Snapshot Date: 2011-10-20 07:20:33 -0700 (Thu, 20 Oct 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_8/madman/Rpacks/CMA
Last Changed Rev: 54800 / Revision: 59457
Last Changed Date: 2011-04-13 15:27:35 -0700 (Wed, 13 Apr 2011)
lamb1 Linux (openSUSE 11.3) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: CMA
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch CMA_1.10.0.tar.gz
StartedAt: 2011-10-20 14:22:02 -0700 (Thu, 20 Oct 2011)
EndedAt: 2011-10-20 14:23:53 -0700 (Thu, 20 Oct 2011)
EllapsedTime: 111.0 seconds
RetCode: 0
Status:  OK 
CheckDir: CMA.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/CMA.Rcheck'
* using R version 2.13.2 (2011-09-30)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'CMA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'CMA' version '1.10.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CMA' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
ROCinternal: no visible binding for global variable 'xlab'
ROCinternal: no visible binding for global variable 'ylab'
ROCinternal: no visible binding for global variable 'main'
ROCinternal: no visible binding for global variable 'lwd'
rfe: no visible binding for global variable 'cost'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under inst/doc ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignettes ... SKIPPED
* checking PDF version of manual ... OK

CMA.Rcheck/00install.out:

* installing *source* package 'CMA' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (CMA)

CMA.Rcheck/CMA-Ex.timings:

nameusersystemelapsed
ElasticNetCMA4.8710.1785.088
GeneSelection0.4120.0510.474
GenerateLearningsets0.0250.0010.027
LassoCMA1.0490.0971.242
Planarplot0.4400.0310.538
classification0.0000.0000.001
compBoostCMA2.0870.5002.778
compare0.0000.0000.001
dldaCMA0.5240.0400.567
evaluation0.2860.0080.295
fdaCMA0.1790.0060.185
flexdaCMA0.3550.0160.405
gbmCMA7.3610.1687.588
golub0.0580.0010.059
khan0.0770.0030.080
knnCMA0.5850.0290.622
ldaCMA0.2260.0080.242
nnetCMA0.1610.0080.182
pknnCMA0.2500.0110.261
plrCMA0.9130.0530.972
pls_ldaCMA0.4260.0370.479
pls_lrCMA0.3080.0260.337
pls_rfCMA0.1660.0040.171
pnnCMA0.0740.0020.075
prediction0.0000.0010.000
qdaCMA0.2240.0090.245
rfCMA0.1660.0060.172
scdaCMA0.2260.0260.251
shrinkldaCMA0.2720.0160.297
svmCMA1.8340.0821.925
tune0.0000.0000.001