Package: tigre

Version: 1.5.2

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch tigre_1.5.2.tar.gz

StartedAt: 2011-02-24 17:04:47 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 17:06:11 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 84.2 seconds

RetCode: 0

Status:  OK

CheckDir: tigre.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/tigre.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'tigre/DESCRIPTION' ... OK
* this is package 'tigre' version '1.5.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'tigre' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'tigre' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c miscCFunctions.c -o miscCFunctions.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o tigre.so miscCFunctions.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/tigre.Rcheck/tigre/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: gplots
Loading required package: gtools
Loading required package: gdata
gdata: read.xls support for 'XLS' (Excel 97-2004) files ENABLED.

gdata: read.xls support for 'XLSX' (Excel 2007+) files ENABLED.

Attaching package: 'gdata'

The following object(s) are masked from 'package:Biobase':

    combine

The following object(s) are masked from 'package:utils':

    object.size

Loading required package: caTools
Loading required package: bitops
Loading required package: grid

Attaching package: 'gplots'

The following object(s) are masked from 'package:stats':

    lowess

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (tigre)

name	user	system	elapsed
ExpressionTimeSeries-class	0.002	0.000	0.002
GPLearn	1.895	0.056	1.986
GPModel-class	0.001	0.000	0.000
GPPlot	0.000	0.000	0.001
GPRankTargets	0	0	0
SCGoptim	0.001	0.000	0.000
expTransform	0.001	0.000	0.001
export	0.001	0.000	0.000
generateModels	0.001	0.001	0.000
gpsimCreate	0.000	0.000	0.001
kernCompute	0.001	0.000	0.001
kernCreate	0.005	0.001	0.005
kernDiagGradX	0.002	0.000	0.002
kernGradient	0.002	0.000	0.002
lnDiffErfs	0	0	0
modelDisplay	0.340	0.002	0.342
modelExpandParam	0.001	0.000	0.000
modelExtractParam	0.267	0.003	0.269
modelGradient	0.364	0.001	0.364
modelTieParam	0.005	0.000	0.006
optimiDefaultConstraint	0	0	0
plotTimeseries	0.230	0.007	0.238
processData	0.543	0.005	0.549
scoreList-class	0.001	0.000	0.001
tigre-package	0.000	0.000	0.001