rtracklayer 1.11.11
Michael Lawrence
| Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/rtracklayer | | Last Changed Rev: 52306 / Revision: 53255 | | Last Changed Date: 2011-01-31 21:36:29 -0800 (Mon, 31 Jan 2011) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | [ WARNINGS ] | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
| petty | Mac OS X Snow Leopard (10.6.4) / i386 | OK | WARNINGS | OK |
* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/rtracklayer.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rtracklayer/DESCRIPTION' ... OK
* this is package 'rtracklayer' version '1.11.11'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rtracklayer' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
IRanges ucscSchema
Undocumented S4 classes:
UCSCSchema
Undocumented S4 methods:
generic 'genome' and siglist 'UCSCSchema'
generic 'tableName' and siglist 'UCSCSchema'
generic 'ucscSchema' and siglist 'UCSCSchemaDescription'
generic 'ucscSchema' and siglist 'UCSCTableQuery'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... WARNING
Package vignettes without corresponding PDF:
D:/biocbld/bbs-2.8-bioc/meat/rtracklayer.Rcheck/00_pkg_src/rtracklayer/inst/doc/rtracklayer.Rnw
SKIPPED
* checking PDF version of manual ... OK
WARNING: There were 2 warnings, see
'D:/biocbld/bbs-2.8-bioc/meat/rtracklayer.Rcheck/00check.log'
for details
* installing *source* package 'rtracklayer' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c IRanges_stubs.c -o IRanges_stubs.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c R_init_rtracklayer.c -o R_init_rtracklayer.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c bigWig.c -o bigWig.o
bigWig.c: In function 'BWGFile_query':
bigWig.c:189:32: warning: 'ans_score' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c chain_io.c -o chain_io.o
chain_io.c: In function 'read_chain_file':
chain_io.c:34:7: warning: 'tstart' may be used uninitialized in this function
chain_io.c:34:15: warning: 'qstart' may be used uninitialized in this function
chain_io.c:35:48: warning: 'trc' may be used uninitialized in this function
chain_io.c:35:53: warning: 'qrc' may be used uninitialized in this function
chain_io.c:36:15: warning: 'block' may be used uninitialized in this function
chain_io.c:39:24: warning: 'header_line' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/bPlusTree.c -o ucsc/bPlusTree.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/bbiRead.c -o ucsc/bbiRead.o
ucsc/bbiRead.c: In function 'bbiSummaryArrayExtended':
ucsc/bbiRead.c:552:1: warning: implicit declaration of function 'bzero'
ucsc/bbiRead.c:552:1: warning: incompatible implicit declaration of built-in function 'bzero'
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/bbiWrite.c -o ucsc/bbiWrite.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/bwgCreate.c -o ucsc/bwgCreate.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/bwgQuery.c -o ucsc/bwgQuery.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/cirTree.c -o ucsc/cirTree.o
ucsc/cirTree.c: In function 'rTreeFromChromRangeArray':
ucsc/cirTree.c:234:1: warning: unknown conversion type character 'l' in format
ucsc/cirTree.c:234:1: warning: too many arguments for format
ucsc/cirTree.c: In function 'writeTreeToOpenFile':
ucsc/cirTree.c:315:5: warning: unknown conversion type character 'l' in format
ucsc/cirTree.c:315:5: warning: too many arguments for format
ucsc/cirTree.c:330:9: warning: unknown conversion type character 'l' in format
ucsc/cirTree.c:330:9: warning: unknown conversion type character 'l' in format
ucsc/cirTree.c:330:9: warning: format '%d' expects type 'int', but argument 2 has type 'long long unsigned int'
ucsc/cirTree.c:330:9: warning: format '%s' expects type 'char *', but argument 3 has type 'long long unsigned int'
ucsc/cirTree.c:330:9: warning: too many arguments for format
ucsc/cirTree.c: In function 'rFindOverlappingBlocks':
ucsc/cirTree.c:497:1: warning: unknown conversion type character 'l' in format
ucsc/cirTree.c:497:1: warning: format '%u' expects type 'unsigned int', but argument 3 has type 'long long unsigned int'
ucsc/cirTree.c:497:1: warning: too many arguments for format
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/common.c -o ucsc/common.o
ucsc/common.c: In function 'mustWrite':
ucsc/common.c:1835:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:1835:5: warning: format '%s' expects type 'char *', but argument 2 has type 'long long int'
ucsc/common.c:1835:5: warning: too many arguments for format
ucsc/common.c: In function 'mustRead':
ucsc/common.c:1846:2: warning: unknown conversion type character 'l' in format
ucsc/common.c:1846:2: warning: format '%s' expects type 'char *', but argument 2 has type 'long long int'
ucsc/common.c:1846:2: warning: too many arguments for format
ucsc/common.c:1848:2: warning: unknown conversion type character 'l' in format
ucsc/common.c:1848:2: warning: too many arguments for format
ucsc/common.c: In function 'fileOffsetSizeMerge':
ucsc/common.c:2069:9: warning: unknown conversion type character 'l' in format
ucsc/common.c:2069:9: warning: unknown conversion type character 'l' in format
ucsc/common.c:2069:9: warning: too many arguments for format
ucsc/common.c: In function 'safecpy':
ucsc/common.c:2505:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2505:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2505:5: warning: too many arguments for format
ucsc/common.c: In function 'safencpy':
ucsc/common.c:2514:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2514:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2514:5: warning: too many arguments for format
ucsc/common.c: In function 'safecat':
ucsc/common.c:2528:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2528:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2528:5: warning: too many arguments for format
ucsc/common.c: In function 'safencat':
ucsc/common.c:2537:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2537:5: warning: unknown conversion type character 'l' in format
ucsc/common.c:2537:5: warning: too many arguments for format
ucsc/common.c: In function 'byteSwap64':
ucsc/common.c:2169:21: warning: array subscript is above array bounds
ucsc/common.c:2170:21: warning: array subscript is above array bounds
ucsc/common.c:2171:21: warning: array subscript is above array bounds
ucsc/common.c:2172:21: warning: array subscript is above array bounds
ucsc/common.c:2173:8: warning: array subscript is above array bounds
ucsc/common.c:2174:8: warning: array subscript is above array bounds
ucsc/common.c:2175:8: warning: array subscript is above array bounds
ucsc/common.c:2176:8: warning: array subscript is above array bounds
ucsc/common.c: In function 'byteSwapDouble':
ucsc/common.c:2273:21: warning: array subscript is above array bounds
ucsc/common.c:2274:21: warning: array subscript is above array bounds
ucsc/common.c:2275:21: warning: array subscript is above array bounds
ucsc/common.c:2276:21: warning: array subscript is above array bounds
ucsc/common.c:2277:8: warning: array subscript is above array bounds
ucsc/common.c:2278:8: warning: array subscript is above array bounds
ucsc/common.c:2279:8: warning: array subscript is above array bounds
ucsc/common.c:2280:8: warning: array subscript is above array bounds
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/errabort.c -o ucsc/errabort.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/hash.c -o ucsc/hash.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/linefile.c -o ucsc/linefile.o
ucsc/linefile.c:34:15: warning: 'getDecompressor' defined but not used
ucsc/linefile.c:102:15: warning: 'headerBytes' defined but not used
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/localmem.c -o ucsc/localmem.o
ucsc/localmem.c: In function 'newBlock':
ucsc/localmem.c:39:5: warning: unknown conversion type character 'l' in format
ucsc/localmem.c:39:5: warning: too many arguments for format
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/sqlNum.c -o ucsc/sqlNum.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/zlibFace.c -o ucsc/zlibFace.o
ucsc/zlibFace.c: In function 'zCompress':
ucsc/zlibFace.c:49:6: warning: unknown conversion type character 'l' in format
ucsc/zlibFace.c:49:6: warning: format '%s' expects type 'char *', but argument 2 has type 'long long int'
ucsc/zlibFace.c:49:6: warning: too many arguments for format
ucsc/zlibFace.c: In function 'zUncompress':
ucsc/zlibFace.c:70:6: warning: unknown conversion type character 'l' in format
ucsc/zlibFace.c:70:6: warning: format '%s' expects type 'char *', but argument 2 has type 'long long int'
ucsc/zlibFace.c:70:6: warning: too many arguments for format
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/dystring.c -o ucsc/dystring.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/hmmstats.c -o ucsc/hmmstats.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/obscure.c -o ucsc/obscure.o
ucsc/obscure.c: In function 'sprintLongWithCommas':
ucsc/obscure.c:545:5: warning: unknown conversion type character 'l' in format
ucsc/obscure.c:545:5: warning: unknown conversion type character 'l' in format
ucsc/obscure.c:545:5: warning: unknown conversion type character 'l' in format
ucsc/obscure.c:545:5: warning: unknown conversion type character 'l' in format
ucsc/obscure.c:545:5: warning: too many arguments for format
ucsc/obscure.c:553:5: warning: unknown conversion type character 'l' in format
ucsc/obscure.c:553:5: warning: unknown conversion type character 'l' in format
ucsc/obscure.c:553:5: warning: unknown conversion type character 'l' in format
ucsc/obscure.c:553:5: warning: too many arguments for format
ucsc/obscure.c:559:5: warning: unknown conversion type character 'l' in format
ucsc/obscure.c:559:5: warning: unknown conversion type character 'l' in format
ucsc/obscure.c:559:5: warning: too many arguments for format
ucsc/obscure.c:562:5: warning: unknown conversion type character 'l' in format
ucsc/obscure.c:562:5: warning: too many arguments for format
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/pipeline.c -o ucsc/pipeline.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/rangeTree.c -o ucsc/rangeTree.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/rbTree.c -o ucsc/rbTree.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/memalloc.c -o ucsc/memalloc.o
ucsc/memalloc.c: In function 'needLargeMem':
ucsc/memalloc.c:91:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:91:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:91:10: warning: too many arguments for format
ucsc/memalloc.c:94:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:94:14: warning: format '%d' expects type 'int', but argument 2 has type 'size_t'
ucsc/memalloc.c:94:14: warning: too many arguments for format
ucsc/memalloc.c: In function 'needLargeMemResize':
ucsc/memalloc.c:114:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:114:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:114:10: warning: too many arguments for format
ucsc/memalloc.c:117:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:117:14: warning: format '%d' expects type 'int', but argument 2 has type 'size_t'
ucsc/memalloc.c:117:14: warning: too many arguments for format
ucsc/memalloc.c: In function 'needHugeMem':
ucsc/memalloc.c:139:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:139:14: warning: format '%d' expects type 'int', but argument 2 has type 'size_t'
ucsc/memalloc.c:139:14: warning: too many arguments for format
ucsc/memalloc.c: In function 'needHugeMemResize':
ucsc/memalloc.c:161:2: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:161:2: warning: format '%d' expects type 'int', but argument 2 has type 'size_t'
ucsc/memalloc.c:161:2: warning: too many arguments for format
ucsc/memalloc.c: In function 'needMem':
ucsc/memalloc.c:187:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:187:10: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:187:10: warning: too many arguments for format
ucsc/memalloc.c:190:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:190:14: warning: format '%d' expects type 'int', but argument 2 has type 'size_t'
ucsc/memalloc.c:190:14: warning: too many arguments for format
ucsc/memalloc.c: In function 'carefulFree':
ucsc/memalloc.c:318:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:318:14: warning: too many arguments for format
ucsc/memalloc.c:322:14: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:322:14: warning: too many arguments for format
ucsc/memalloc.c: In function 'carefulCheckHeap':
ucsc/memalloc.c:360:18: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:360:18: warning: too many arguments for format
ucsc/memalloc.c:364:18: warning: unknown conversion type character 'l' in format
ucsc/memalloc.c:364:18: warning: too many arguments for format
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/dlist.c -o ucsc/dlist.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/udc.c -o ucsc/udc.o
ucsc/udc.c: In function 'udcDataViaLocal':
ucsc/udc.c:188:1: warning: unknown conversion type character 'l' in format
ucsc/udc.c:188:1: warning: format '%s' expects type 'char *', but argument 4 has type 'long long unsigned int'
ucsc/udc.c:188:1: warning: too many arguments for format
ucsc/udc.c:195:5: warning: unknown conversion type character 'l' in format
ucsc/udc.c:195:5: warning: too many arguments for format
ucsc/udc.c: In function 'udcDataViaSlow':
ucsc/udc.c:244:1: warning: unknown conversion type character 'l' in format
ucsc/udc.c:244:1: warning: format '%s' expects type 'char *', but argument 4 has type 'long long unsigned int'
ucsc/udc.c:244:1: warning: too many arguments for format
ucsc/udc.c:262:2: warning: unknown conversion type character 'l' in format
ucsc/udc.c:262:2: warning: too many arguments for format
ucsc/udc.c: In function 'udcNewCreateBitmapAndSparse':
ucsc/udc.c:439:7: warning: unknown conversion type character 'l' in format
ucsc/udc.c:439:7: warning: format '%d' expects type 'int', but argument 3 has type 'long long int'
ucsc/udc.c:439:7: warning: too many arguments for format
ucsc/udc.c: In function 'fetchMissingBlocks':
ucsc/udc.c:994:4: warning: unknown conversion type character 'l' in format
ucsc/udc.c:994:4: warning: format '%s' expects type 'char *', but argument 2 has type 'long long unsigned int'
ucsc/udc.c:994:4: warning: unknown conversion type character 'l' in format
ucsc/udc.c:994:4: warning: format '%d' expects type 'int', but argument 3 has type 'char *'
ucsc/udc.c:994:4: warning: too many arguments for format
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/net.c -o ucsc/net.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/bits.c -o ucsc/bits.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/internet.c -o ucsc/internet.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/https.c -o ucsc/https.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/base64.c -o ucsc/base64.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/verbose.c -o ucsc/verbose.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/os.c -o ucsc/os.o
In file included from ucsc/os.c:4:0:
ucsc/oswin9x.c: In function 'listDir':
ucsc/oswin9x.c:99:7: warning: 'currentDir' may be used uninitialized in this function
ucsc/oswin9x.c: In function 'listDirX':
ucsc/oswin9x.c:154:9: warning: 'currentDir' may be used uninitialized in this function
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/wildcmp.c -o ucsc/wildcmp.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include" -I"D:/biocbld/BBS-2˜1.8-B/R/library/IRanges/include" -O2 -Wall -std=gnu99 -c ucsc/_portimpl.c -o ucsc/_portimpl.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o rtracklayer.dll tmp.def IRanges_stubs.o R_init_rtracklayer.o bigWig.o chain_io.o ucsc/bPlusTree.o ucsc/bbiRead.o ucsc/bbiWrite.o ucsc/bwgCreate.o ucsc/bwgQuery.o ucsc/cirTree.o ucsc/common.o ucsc/errabort.o ucsc/hash.o ucsc/linefile.o ucsc/localmem.o ucsc/sqlNum.o ucsc/zlibFace.o ucsc/dystring.o ucsc/hmmstats.o ucsc/obscure.o ucsc/pipeline.o ucsc/rangeTree.o ucsc/rbTree.o ucsc/memalloc.o ucsc/dlist.o ucsc/udc.o ucsc/net.o ucsc/bits.o ucsc/_cheapcgi.o ucsc/internet.o ucsc/https.o ucsc/base64.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o ucsc/_portimpl.o -lRzlib -lws2_32 -LD:/biocbld/BBS-2˜1.8-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/rtracklayer.Rcheck/rtracklayer/libs/x64
** R
** data
** demo
** inst
** preparing package for lazy loading
Loading required package: bitops
Creating a new generic function for "offset" in "rtracklayer"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (rtracklayer)