Package: plateCore

Version: 1.9.0

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings plateCore_1.9.0.tar.gz

StartedAt: 2011-02-24 21:16:54 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 21:20:13 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 198.4 seconds

RetCode: 0

Status:  OK

CheckDir: plateCore.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/plateCore.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'plateCore/DESCRIPTION' ... OK
* this is package 'plateCore' version '1.9.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'plateCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File type 'perl' not found or no open command associated with it.
File type 'perl' not found or no open command associated with it.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'plateCore' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: rrcov
Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)

Attaching package: 'flowCore'

The following object(s) are masked from 'package:stats':

    alias, filter

Loading required package: lattice
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Loading required package: RColorBrewer

Attaching package: 'latticeExtra'

The following object(s) are masked from 'package:flowViz':

    ecdfplot

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (plateCore)

name	user	system	elapsed
Subset-methods	4.44	0.04	4.47
applyControlGates-methods	15.68	0.00	15.71
compensate-methods	5.79	0.00	5.79
compensationSet	0.19	0.01	0.20
densityplot-methods	1.76	0.02	1.78
fixAutoFl-methods	5.88	0.00	5.89
flowPlate-class	3.55	0.00	3.55
flowPlate-method	3.62	0.00	3.62
fpbind-methods	8.09	0.00	8.09
getGroups-methods	1.55	0.00	1.55
gutterPlot-methods	1.58	0.00	1.58
mfiPlot-methods	16.11	0.00	16.12
on-methods	9.84	0.04	9.89
panel.densityplot.flowPlate	1.72	0.02	1.74
panel.xyplot.flowPlate	1.75	0.00	1.75
plateCore-package	3.45	0.00	3.45
plateSet-methods	3.42	0.00	3.42
plotPlate-methods	4.10	0.01	4.11
prepanel.densityplot.flowPlate	1.78	0.00	1.80
prepanel.xyplot.flowPlate	1.48	0.00	1.48
setControlGates-methods	4.06	0.00	4.06
summaryStats-methods	16.34	0.00	16.36
wellAnnotation-methods	1.41	0.00	1.41
xyplot-methods	1.56	0.00	1.56