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Package 229/436HostnameOS / ArchBUILDCHECKBUILD BIN
les 1.1.5
Julian Gehring
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/les
Last Changed Rev: 52121 / Revision: 53255
Last Changed Date: 2011-01-27 05:05:21 -0800 (Thu, 27 Jan 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK [ WARNINGS ] OK 

Summary

Package: les
Version: 1.1.5
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch les_1.1.5.tar.gz
StartedAt: 2011-02-24 16:03:57 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 16:05:18 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 81.4 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: les.Rcheck
Warnings: 2

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/les.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'les/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'les' version '1.1.5'
* package encoding: UTF-8
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'les' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... WARNING
Warning in Sys.setlocale("LC_CTYPE", "en_US.utf8") :
  OS reports request to set locale to "en_US.utf8" cannot be honored
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... WARNING
checking a package with encoding  'UTF-8'  in an ASCII locale

 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There were 2 warnings, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/les.Rcheck/00check.log'
for details

les.Rcheck/00install.out:

* installing *source* package 'les' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "les"
Creating a new generic function for "summary" in "les"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (les)

les.Rcheck/les-Ex.timings:

nameusersystemelapsed
Les-class0.0010.0000.001
Les0.0200.0020.022
chi2000
ci21.536 0.11321.650
estimate2.4290.0102.439
export0.0000.0000.001
les-package27.747 0.17527.923
plot2.2630.0032.267
regions2.3790.0012.380
threshold2.0940.0012.096
weighting0.0050.0010.006