Package: iSeq

Version: 1.1.1

Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings iSeq_1.1.1.tar.gz

StartedAt: 2011-02-24 18:31:48 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 18:32:55 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 67.4 seconds

RetCode: 0

Status:  OK

CheckDir: iSeq.Rcheck

Warnings: 0

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/iSeq.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'iSeq/DESCRIPTION' ... OK
* this is package 'iSeq' version '1.1.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'iSeq' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'iSeq' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c iSeq.c -o iSeq.o
iSeq.c: In function 'iSeq1':
iSeq.c:208:20: warning: unused variable 'j'
iSeq.c: In function 'subBkg':
iSeq.c:507:4: warning: suggest parentheses around comparison in operand of '&'
gcc -shared -s -static-libgcc -o iSeq.dll tmp.def iSeq.o -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/iSeq.Rcheck/iSeq/libs/i386
** R
** data
**  moving datasets to lazyload DB
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (iSeq)

name	user	system	elapsed
iSeq1	16.28	0.06	16.39
iSeq2	13.86	0.02	13.87
mergetag	1.12	0.00	1.13
peakreg	15.75	0.00	15.81
plotreg	0	0	0