Package: hopach

Version: 2.11.0

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings hopach_2.11.0.tar.gz

StartedAt: 2011-02-24 20:11:45 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 20:12:55 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 70.4 seconds

RetCode: 0

Status:  OK

CheckDir: hopach.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/hopach.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'hopach/DESCRIPTION' ... OK
* this is package 'hopach' version '2.11.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'hopach' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'hopach' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c Rdistances.c -o Rdistances.o
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c hdist.c -o hdist.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o hopach.dll tmp.def Rdistances.o hdist.o -LD:/biocbld/BBS-2˜1.8-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/hopach.Rcheck/hopach/libs/x64
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "as.vector" in "hopach"
Creating a generic function from function "as.hdist"
Creating a new generic function for "as.matrix" in "hopach"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (hopach)

name	user	system	elapsed
boot2fuzzy	6.79	0.00	6.79
bootplot	7.14	0.00	7.14
bootstrap	6.52	0.00	6.52
correlationordering	0.06	0.00	0.06
disscosangle	0	0	0
distancematrix	0.02	0.00	0.02
dplot	0.15	0.00	0.15
hdist-class	0.02	0.00	0.02
hopach	0.64	0.00	0.64
hopach.internal	0	0	0
hopach2tree	0.38	0.00	0.38
labelstomss	0.34	0.00	0.34
makeoutput	6.67	0.00	6.67
prune	2.58	0.00	2.58