Package: genomes

Version: 1.7.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch genomes_1.7.0.tar.gz

StartedAt: 2011-02-24 19:29:26 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 19:30:31 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 64.0 seconds

RetCode: 0

Status:  OK

CheckDir: genomes.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/genomes.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘genomes/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘genomes’ version ‘1.7.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘genomes’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘genomes’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (genomes)

name	user	system	elapsed
doublingTime	0.346	0.017	0.364
genomes-lines	0.268	0.013	0.281
genomes-plot	0.271	0.012	0.286
genomes-print	0.137	0.008	0.149
genomes-subset	0.138	0.006	0.144
genomes-summary	0.033	0.002	0.035
genomes-update	0.004	0.001	0.004
genomes	0.271	0.017	0.289
genus	0.345	0.009	0.356
gold	1.883	0.077	1.968
hmp	0.253	0.005	0.275
image2	0.731	0.026	0.758
lenvs	0.036	0.002	0.039
leuks	0.204	0.008	0.213
like	0.160	0.007	0.169
lproks	0.520	0.026	0.557
plotby	0.993	0.022	1.045
species	0.483	0.010	0.494
table2	0.022	0.002	0.023
taxid2names	0.012	0.002	0.530
term2neighbor	0.067	0.004	1.550
term2summary	2.332	0.053	7.096
top	0.414	0.012	0.449
virus	0.210	0.009	0.989