* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/frmaTools.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'frmaTools/DESCRIPTION' ... OK
* this is package 'frmaTools' version '1.3.11'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'frmaTools' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getFidMetaProbesetCore: no visible global function definition for
'dbGetQuery'
getFidMetaProbesetExtended: no visible global function definition for
'dbGetQuery'
getFidMetaProbesetFull: no visible global function definition for
'dbGetQuery'
getFidProbeset: no visible global function definition for 'dbGetQuery'
hgu133a2ASaFrma: no visible binding for global variable
'hgu133afrmavecs'
hgu133plus2ASaFrma: no visible binding for global variable
'hgu133afrmavecs'
makeVectorPackage: no visible binding for global variable 'object'
* checking Rd files ... WARNING
Error : makeVectorPackage.Rd: non-ASCII input and no declared encoding
problem found in 'makeVectorPackage.Rd'
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK
WARNING: There was 1 warning, see
'D:/biocbld/bbs-2.8-bioc/meat/frmaTools.Rcheck/00check.log'
for details
* installing *source* package 'frmaTools' ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material. To view, type
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")' and for packages 'citation(pkgname)'.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (frmaTools)