externalVector 1.17.0
Biocore Team c/o BioC user list
| Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/externalVector | | Last Changed Rev: 50295 / Revision: 53255 | | Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | OK | OK |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.4) / i386 | OK | [ OK ] | OK |
* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/externalVector.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'externalVector/DESCRIPTION' ... OK
* this is package 'externalVector' version '1.17.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'externalVector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
Arith,externalVectorWithStorage-missing: no visible binding for global
variable '.generic'
Complex,externalVectorWithStorage: no visible binding for global
variable 'x'
Subset2,ANY-ANY-noneIndex: possible error in Subset(x, i, NULL): unused
argument(s) (NULL)
Subset2,ANY-noneIndex-ANY: possible error in Subset(x, NULL, j): unused
argument(s) (j)
external.size,externalResource-gcAllocator: no visible binding for
global variable 'x'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* installing *source* package 'externalVector' ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c allocator.c -o allocator.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c arraySummary.c -o arraySummary.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c coerce.c -o coerce.o
coerce.c: In function 'ComplexFromString':
coerce.c:213: warning: initialization from incompatible pointer type
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c externalVector.c -o externalVector.o
externalVector.c:7: warning: 'ScalarVector' defined but not used
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c groups.c -o groups.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c math.c -o math.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c slice.c -o slice.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c storage.c -o storage.o
storage.c: In function 'createNativeStorageMethods':
storage.c:2627: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2633: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2639: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2643: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2648: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2652: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2657: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2662: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2672: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2677: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2681: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2685: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2690: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2695: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2705: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2709: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2713: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2717: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2722: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2727: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2737: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2741: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2745: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2749: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2753: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2757: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2769: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2775: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2781: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2787: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2793: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2799: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2811: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2817: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2823: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2829: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2835: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2841: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2853: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2859: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2865: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2871: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2877: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2883: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2894: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2899: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2904: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2909: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2914: warning: ISO C forbids conversion of object pointer to function pointer type
storage.c:2919: warning: ISO C forbids conversion of object pointer to function pointer type
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386 -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c subscript.c -o subscript.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o externalVector.so allocator.o arraySummary.o coerce.o externalVector.o groups.o math.o slice.o storage.o subscript.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/externalVector.Rcheck/externalVector/libs/i386
** R
** preparing package for lazy loading
Creating a new generic function for "match" in "externalVector"
Creating a new generic function for "as.vector" in "externalVector"
Creating a new generic function for "as.single" in "externalVector"
Creating a new generic function for "as.list" in "externalVector"
Creating a new generic function for "as.matrix" in "externalVector"
Creating a new generic function for "as.data.frame" in "externalVector"
Creating a new generic function for "colSums" in "externalVector"
Creating a new generic function for "colMeans" in "externalVector"
Creating a new generic function for "rowSums" in "externalVector"
Creating a new generic function for "rowMeans" in "externalVector"
Creating a new generic function for "apply" in "externalVector"
Creating a new generic function for "lapply" in "externalVector"
Creating a new generic function for "sapply" in "externalVector"
Creating a new generic function for "mean" in "externalVector"
Creating a new generic function for "median" in "externalVector"
Creating a generic for 'var' in package 'externalVector'
(the supplied definition differs from and overrides the implicit generic
in package 'stats': Formal arguments differ (in default values?))
Creating a generic for 'cov' in package 'externalVector'
(the supplied definition differs from and overrides the implicit generic
in package 'stats': Formal arguments differ (in default values?))
Creating a generic for 'cor' in package 'externalVector'
(the supplied definition differs from and overrides the implicit generic
in package 'stats': Formal arguments differ (in default values?))
Creating a new generic function for "cov2cor" in "externalVector"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (externalVector)