Package: ddCt

Version: 1.5.0

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch ddCt_1.5.0.tar.gz

StartedAt: 2011-02-24 15:30:01 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 15:30:37 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 35.7 seconds

RetCode: 0

Status:  WARNINGS

CheckDir: ddCt.Rcheck

Warnings: 1

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/ddCt.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'ddCt/DESCRIPTION' ... OK
* this is package 'ddCt' version '1.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'ddCt' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  removeNTC
Undocumented S4 methods:
  generic 'removeNTC' and siglist 'InputFrame'
  generic 'removeNTC' and siglist 'ddCtExpression'
All user-level objects in a package (including S4 classes and methods)
should have documentation entries.
See the chapter 'Writing R documentation files' in manual 'Writing R
Extensions'.
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... NOTE
'library' or 'require' call not declared from: RUnit
* checking tests ...
  Running 'unit.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  '/Users/biocbuild/bbs-2.8-bioc/meat/ddCt.Rcheck/00check.log'
for details

* installing *source* package 'ddCt' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ddCt)

name	user	system	elapsed
InputReader-class	0.001	0.000	0.002
SDMFrame-class	0.079	0.003	0.082
SDMFrame	0.012	0.001	0.013
barploterrbar	0.005	0.001	0.006
ddCtExpression-class	0.146	0.001	0.147
ddCtExpression-methods	0.086	0.001	0.087
elistWrite-methods	0.092	0.001	0.093
errBarchartParameter-class	0	0	0
getDir	0.001	0.000	0.001
replaceVectorByEquality	0.001	0.000	0.000