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Package 29/436 | Hostname | OS / Arch | BUILD | CHECK | BUILD BIN | ||||
aroma.light 1.19.3 Henrik Bengtsson
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |||||
liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | OK | OK | |||||
gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | [ OK ] | OK | |||||
pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | OK | |||||
petty | Mac OS X Snow Leopard (10.6.4) / i386 | OK | WARNINGS | OK |
Package: aroma.light |
Version: 1.19.3 |
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings aroma.light_1.19.3.tar.gz |
StartedAt: 2011-02-24 18:08:22 -0800 (Thu, 24 Feb 2011) |
EndedAt: 2011-02-24 18:09:42 -0800 (Thu, 24 Feb 2011) |
EllapsedTime: 79.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: aroma.light.Rcheck |
Warnings: 0 |
* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/aroma.light.Rcheck' * using R version 2.13.0 Under development (unstable) (2011-01-10 r53950) * using platform: x86_64-pc-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'aroma.light/DESCRIPTION' ... OK * this is package 'aroma.light' version '1.19.3' * package encoding: latin1 * checking package name space information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking whether package 'aroma.light' can be installed ... OK * checking package directory ... OK * checking for portable file names ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the name space can be loaded with stated dependencies ... OK * checking whether the name space can be unloaded cleanly ... OK * checking for unstated dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... NOTE 'library' or 'require' call not declared from: R.basic * checking examples ... OK * checking PDF version of manual ... OK
aroma.light.Rcheck/00install.out:
* installing *source* package 'aroma.light' ... ** R ** inst ** preparing package for lazy loading R.methodsS3 v1.2.1 (2010-09-18) successfully loaded. See ?R.methodsS3 for help. ** help *** installing help indices ** building package indices ... ** testing if installed package can be loaded * DONE (aroma.light)
aroma.light.Rcheck/aroma.light-Ex.timings:
name | user | system | elapsed | |
backtransformAffine.matrix | 0 | 0 | 0 | |
backtransformPrincipalCurve.matrix | 0.94 | 0.00 | 0.94 | |
calibrateMultiscan.matrix | 0 | 0 | 0 | |
callNaiveGenotypes.numeric | 0.67 | 0.00 | 0.67 | |
distanceBetweenLines | 0.02 | 0.00 | 0.02 | |
findPeaksAndValleys.density | 0.06 | 0.00 | 0.06 | |
fitPrincipalCurve.matrix | 0.56 | 0.03 | 0.61 | |
fitXYCurve.matrix | 0.08 | 0.00 | 0.08 | |
iwpca.matrix | 0.02 | 0.00 | 0.02 | |
likelihood.smooth.spline | 0.36 | 0.02 | 0.37 | |
medianPolish.matrix | 0 | 0 | 0 | |
normalizeAffine.matrix | 15.75 | 0.00 | 15.77 | |
normalizeCurveFit.matrix | 15.09 | 0.00 | 15.09 | |
normalizeDifferencesToAverage.list | 0.03 | 0.00 | 0.03 | |
normalizeFragmentLength | 0.99 | 0.00 | 0.99 | |
normalizeQuantileRank.list | 0.14 | 0.00 | 0.14 | |
normalizeQuantileRank.matrix | 0.06 | 0.00 | 0.06 | |
normalizeQuantileSpline.matrix | 2.25 | 0.00 | 2.25 | |
normalizeTumorBoost.numeric | 0.12 | 0.00 | 0.13 | |
robustSmoothSpline | 0.04 | 0.00 | 0.26 | |
sampleCorrelations.matrix | 0.22 | 0.00 | 0.22 | |
sampleTuples | 0 | 0 | 0 | |
weightedMedian | 4.11 | 0.14 | 4.26 | |
wpca.matrix | 0.09 | 0.02 | 0.11 | |