Package: annaffy

Version: 1.23.1

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch annaffy_1.23.1.tar.gz

StartedAt: 2011-02-24 14:53:40 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 14:54:35 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 54.7 seconds

RetCode: 0

Status:  OK

CheckDir: annaffy.Rcheck

Warnings: 0

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/annaffy.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'annaffy/DESCRIPTION' ... OK
* this is package 'annaffy' version '1.23.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'annaffy' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'annaffy' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (annaffy)

name	user	system	elapsed
aafChromLoc	0.480	0.022	0.503
aafChromosome	0.086	0.005	0.091
aafCytoband	0.116	0.007	0.123
aafDescription	0.079	0.005	0.085
aafGO	0.780	0.032	0.812
aafGenBank	0.083	0.006	0.089
aafLocusLink	0.118	0.005	0.124
aafPathway	0.781	0.013	0.793
aafProbe	0.096	0.004	0.100
aafPubMed	0.205	0.016	0.221
aafSearchText	1.507	0.020	1.526
aafSymbol	0.087	0.004	0.091
aafUniGene	0.080	0.005	0.085
is.annpkg	3.188	0.174	3.527