MotIV 1.5.0
Eloi Mercier , Raphael Gottardo
| Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MotIV | | Last Changed Rev: 50295 / Revision: 53255 | | Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | WARNINGS | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | OK | WARNINGS | OK |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | OK | WARNINGS | [ OK ] |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | WARNINGS | OK |
| petty | Mac OS X Snow Leopard (10.6.4) / i386 | OK | WARNINGS | OK |
* installing *source* package 'MotIV' ...
Using auto-selected zip option '--use-zip-data'
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include -O2 -Wall -c Alignment.cpp -o Alignment.o
Alignment.cpp: In member function 'virtual double SmithWatermanAffine::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:793:9: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double NeedlemanWunsch::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:592:9: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWaterman::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:244:9: warning: 'forScore' may be used uninitialized in this function
Alignment.cpp:244:19: warning: 'revScore' may be used uninitialized in this function
Alignment.cpp: In member function 'virtual double SmithWatermanUngappedExtended::AlignMotifs(Motif*, Motif*, int&, int&, int&, bool&)':
Alignment.cpp:426:9: warning: 'forScore' may be used uninitialized in this function
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include -O2 -Wall -c ColumnComp.cpp -o ColumnComp.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include -O2 -Wall -c DeclareAll.cpp -o DeclareAll.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include -O2 -Wall -c Motif.cpp -o Motif.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include -O2 -Wall -c MotifDistances.cpp -o MotifDistances.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include -O2 -Wall -c MotifMatch.cpp -o MotifMatch.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include -O2 -Wall -c PlatformSupport.cpp -o PlatformSupport.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include -O2 -Wall -c RandPSSMGen.cpp -o RandPSSMGen.o
x86_64-w64-mingw32-g++ -I"D:/biocbld/bbs-2.8-bioc/R/include" -Ifusion_sdk -D_USE_MEM_MAPPING_ -D_MSC_VER -I/src/include -IC:/Rtools212/GSL64/include -O2 -Wall -c generateScoresDB.cpp -o generateScoresDB.o
x86_64-w64-mingw32-g++ -shared -s -static-libgcc -o MotIV.dll tmp.def Alignment.o ColumnComp.o DeclareAll.o Motif.o MotifDistances.o MotifMatch.o PlatformSupport.o RandPSSMGen.o generateScoresDB.o -lws2_32 -LC:/Rtools212/GSL64/lib -lgsl -lgslcblas -lm -LD:/biocbld/bbs-2.8-bioc/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/MotIV.buildbin-libdir/MotIV/libs/x64
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "MotIV"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'MotIV' as MotIV_1.5.0.zip
* DONE (MotIV)